SRR2188088 (PRJNA294100)

Processing Status: Completed

General Details

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Sample Name GSM1862952
Organism Trypanosoma brucei
Release Date 12/2015

Sample Links

Run Details

Spots 64636189
Total Bases 2326902804
Total Bases 2326902804

Repository Details

SRA SRR2188088
ENA SRR2188088
BioProject PRJNA294100

Experiment Details

Title PCF RiboProf replicate_3 reanalysis

Sample Details

Run Accession SRR2188088
Total Number Of Spots (Original File)) 64636189
Total Number Of Bases (Original File) 2326902804
Average Read Length 36
Original File Size (Mb) 1382
Experiment Id SRX1166330
Library Name 0.0
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP062914
Pubmed Id 26393539
Sample SRS1046665
Biosample SAMN04014719
Sample Type simple
Organism Taxid 5691
Organism Trypanosoma brucei
Sample Name GSM1862952
Center Name GEO
Submission SRA291745
Month 12
Year 2015
Author Parsons
Sample Source Tb927 PCF in SDM79 medium
Sample Title PCF RiboProf replicate_3 reanalysis
Library-Type Ribo-Seq
Replicate-Number 0.0
Condition Test
Inhibitor 0.0
Timepoint NANA
Tissue 0.0
Cell-Line 0.0
Cellular-Compartment 0.0
Stage Procyclic Form
Gene 0.0
Sex 0.0
Strain 927
Age 0.0
Infected 0.0
Disease 0.0
Genotype 0.0
Feeding 0.0
Temperature 0.0
Sirna 0.0
Sgrna 0.0
Shrna 0.0
Plasmid 0.0
Growth-Condition 0.0
Stress 0.0
Cancer 0.0
Microrna 0.0
Individual 0.0
Antibody Used 0.0
Ethnicity 0.0
Dose 0.0
Stimulation 0.0
Host Organism 0.0
Unique Molecular Identifier (Umi) 0.0
Adapter Sequence 0.0
Mode Of Separation 0.0
Mode Of Rrna Depletion 0.0
Barcode Information 0.0
Nucelase Used 0.0
Kit Used 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR2188088 Trypanosoma brucei Tb927 PCF in SDM79 medium 0.0 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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