SRR2188092 (PRJNA294100)

Processing Status: Completed

General Details

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Sample Name GSM1862956
Organism Trypanosoma brucei
Release Date 12/2015

Sample Links

Run Details

Spots 86171690
Total Bases 3102180840
Total Bases 3102180840

Repository Details

SRA SRR2188092
ENA SRR2188092
BioProject PRJNA294100

Experiment Details

Title cBF RiboProf replicate_1 reanalysis

Sample Details

Run Accession SRR2188092
Total Number Of Spots (Original File)) 86171690
Total Number Of Bases (Original File) 3102180840
Average Read Length 36
Original File Size (Mb) 1935
Experiment Id SRX1166334
Library Name 0.0
Library Strategy RNA-Seq
Library Selection cDNA
Library Source TRANSCRIPTOMIC
Library Layout SINGLE
Insert Size 0
Insert Deviation 0
Platform ILLUMINA
Model Illumina Genome Analyzer II
Sra Project Accession (Srp) SRP062914
Pubmed Id 26393539
Sample SRS1046662
Biosample SAMN04014723
Sample Type simple
Organism Taxid 5691
Organism Trypanosoma brucei
Sample Name GSM1862956
Center Name GEO
Submission SRA291745
Month 12
Year 2015
Author Parsons
Sample Source Tb427 grown in vitro in HMI-9 medium
Sample Title cBF RiboProf replicate_1 reanalysis
Library-Type Ribo-Seq
Replicate-Number 0.0
Condition Test
Inhibitor 0.0
Timepoint NANA
Tissue 0.0
Cell-Line 0.0
Cellular-Compartment 0.0
Stage cultrured bloodstream Form
Gene 0.0
Sex 0.0
Strain 427
Age 0.0
Infected 0.0
Disease 0.0
Genotype 0.0
Feeding 0.0
Temperature 0.0
Sirna 0.0
Sgrna 0.0
Shrna 0.0
Plasmid 0.0
Growth-Condition 0.0
Stress 0.0
Cancer 0.0
Microrna 0.0
Individual 0.0
Antibody Used 0.0
Ethnicity 0.0
Dose 0.0
Stimulation 0.0
Host Organism 0.0
Unique Molecular Identifier (Umi) 0.0
Adapter Sequence 0.0
Mode Of Separation 0.0
Mode Of Rrna Depletion 0.0
Barcode Information 0.0
Nucelase Used 0.0
Kit Used 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)
SRR2188092 Trypanosoma brucei Tb427 grown in vitro in HMI-9 medium 0.0 Ribo-Seq 0.0
Run Accession Study Accession Scientific Name Description Cell Line Library Type Treatment Trips-Viz GWIPS-viz Reads BAM BigWig (F) BigWig (R)

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