Liu et al. 2013 (PRJNA205933)

General Details

Title High resolution view of bacteriophage lambda gene expression by ribosome profiling
Organism
Number of Samples 20
Release Date 2013/05/30 00:00
Sequencing Types
Protocol Details

Study Links

Repository Details

SRA SRP023499
ENA SRP023499
GEO GSE47509
BioProject PRJNA205933

Publication

Title
Authors Liu X, Jiang H, Gu Z, Roberts JW
Journal Proceedings of the National Academy of Sciences of the United States of America
Publication Date 2013 Jul 16
Abstract Bacteriophage lambda is one of the most extensively studied organisms and has been a primary model for understanding basic modes of genetic regulation. Here, we examine the progress of lambda gene expression during phage development by ribosome profiling and, thereby, provide a very-high-resolution view of lambda gene expression. The known genes are expressed in a predictable fashion, authenticating the analysis. However, many previously unappreciated potential open reading frames become apparent in the expression analysis, revealing an unexpected complexity in the pattern of lambda gene function.
PMC PMC3718152
PMID 23812753
DOI
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)
SRR869824 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869816 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869817 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869818 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869819 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869820 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869821 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869822 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869823 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869825 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869826 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869827 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869828 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869829 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869830 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869831 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869832 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869833 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869834 PRJNA205933 Escherichia coli 0.0 0.0 0.0
SRR869835 PRJNA205933 Escherichia coli 0.0 0.0 0.0
Run Accession Study Accession Scientific Name Cell Line Library Type Treatment GWIPS-viz Trips-Viz Reads BAM BigWig (F) BigWig (R)

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