Liu et al. 2013 (PRJNA205933)
General Details
Title | High resolution view of bacteriophage lambda gene expression by ribosome profiling |
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Organism | |
Number of Samples | 20 |
Release Date | 2013/05/30 00:00 |
Sequencing Types | |
Protocol Details |
Study Links
GWIPS-viz | Trips-Viz |
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Repository Details
SRA | SRP023499 |
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ENA | SRP023499 |
GEO | GSE47509 |
BioProject | PRJNA205933 |
Publication
Title | |
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Authors | Liu X, Jiang H, Gu Z, Roberts JW |
Journal | Proceedings of the National Academy of Sciences of the United States of America |
Publication Date | 2013 Jul 16 |
Abstract | Bacteriophage lambda is one of the most extensively studied organisms and has been a primary model for understanding basic modes of genetic regulation. Here, we examine the progress of lambda gene expression during phage development by ribosome profiling and, thereby, provide a very-high-resolution view of lambda gene expression. The known genes are expressed in a predictable fashion, authenticating the analysis. However, many previously unappreciated potential open reading frames become apparent in the expression analysis, revealing an unexpected complexity in the pattern of lambda gene function. |
PMC | PMC3718152 |
PMID | 23812753 |
DOI |
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
SRR869824 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869816 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869817 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869818 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869819 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869820 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869821 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869822 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869823 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869825 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869826 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869827 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869828 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869829 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869830 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869831 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869832 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869833 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869834 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
SRR869835 | PRJNA205933 | Escherichia coli | 0.0 | 0.0 | 0.0 | ||||||||
Run Accession | Study Accession | Scientific Name | Cell Line | Library Type | Treatment | GWIPS-viz | Trips-Viz | Reads | BAM | BigWig (F) | BigWig (R) |
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