FastQCFastQC Report
Thu 22 Jun 2023
ERR1190989_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1190989_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38883498
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length1-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1449080.3726722323181932No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC1326070.3410367040537351No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGAC1316820.3386578028550827No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCG1277210.3284709621546909No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGC1178760.30315173804579No Hit
TGGAATGAGTCCACTTTAAATCCTTTAACGA1163090.2991217508260188No Hit
TAATCCACCTATAACTTCTCTGTTAACCCA1142150.2937364328692856No Hit
AATGCCTAAAGGAAAGATCCAAAAAGAT921200.23691284153498743No Hit
ACGTACGCAGTTTTATCCGGTAAAGCGAATG914590.23521289159735576No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT913730.2349917180805081No Hit
CCGTCAGCTCACATAGTGACGCAGGCAGTGCGACC855260.219954490719945No Hit
GGTCGGTTTCTATCTATTTACGATTTCTC836980.21525326759439184No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA806320.20736817454026385No Hit
TAATCCACCTATAACTTCTCTGTTAACCCAA758060.19495673974599714No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT740220.19036867516394743No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC737230.1895997114251398No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACAC647550.16653594283106937No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCT641780.16505202284012616No Hit
CAGCGGAGGAAAAGAAACTAACCAGGATTCCCT638420.1641879030533724No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG637220.1638792888438175No Hit
TGCGCCGCGACCGGCTCCGGGACGGCCGGG622830.16017849011423818No Hit
GAATGCCTAAAGGAAAGATCCAAAAAGAT606250.15591447045222115No Hit
AGCGGAGGAAAAGAAACTAACCAGGATTCCCT600320.15438940190000394No Hit
ACGGTGGCCATGGAAGTCGGAATCCGCT589110.15150643082574514No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT585000.15044942715801957No Hit
AATGCCTAAAGGAAAGATCCAAAAAGATA576200.1481862562879502No Hit
CTACTAAAAGTATTGGAGAAAGAAATTCGTACA552680.14213741778067396No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGC551210.1417593653739692No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCT510310.13124076439830595No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAAGAG499620.1284915261481876No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCCGGG490400.126120340304774No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTG476850.12263557152188313No Hit
CAACTTCTTAGAGGGACAAGTGGCGT474910.12213664521643604No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC471530.12126738185952303No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC465700.11976803115810207No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAAGAGG464110.11935911733044183No Hit
AAGTCAGAATCCCGCCCAGGCGGAACGATA457750.11772346201980079No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTG449500.11560173932911076No Hit
GTCTACGGCCATACCACCCTGAACGCGCCCGATC441710.11359831875208347No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC439580.11305052853012351No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGAT436980.11238186440942119No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT423650.10895367489828206No Hit
GAGGTGGAGCACGAGCGTACGCGTTAGGACCCGA423630.10894853132812278No Hit
AAGGGAGTCGGGTTCAGATCCCCGAATCCGGAG423030.10879422422334532No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT421730.10845989216299419No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC419970.10800725798898031No Hit
CACGAGCGTACGCGTTAGGACCCGAAAGATGGT406940.1046562220302299No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG405840.10437332567147123No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA404410.10400556040508495No Hit
GCACGAGCGTACGCGTTAGGACCCGAAAGATGG401460.10324688380659579No Hit
CAACTTCTTAGAGGGACAAGTGGCGTT400080.10289197746560763No Hit
AGGGAGTCGGGTTCAGATCCCCGAATCCGGAG394960.10157522350484002No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)