FastQCFastQC Report
Thu 22 Jun 2023
ERR1190991_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1190991_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences54474851
Total Bases1.7 Gbp
Sequences flagged as poor quality0
Sequence length1-51
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC22534424.136664825388876No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC20859673.8292293814626497No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC17540313.2198913219606604No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC9666931.7745674972107772No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT7078901.2994803785695532No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT6393041.173576408680769No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC5985931.0988428403411328No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT5752291.055953324222952No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG4903550.9001493184442121No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC4652280.8540234465258105No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC4253210.780765788602157No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC3596320.660179869055539No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT3041110.5582594434264722No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCC2867820.5264484339755239No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2631990.48315689748284024No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC2516440.46194527452677203No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC2458670.4513403809034741No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT2363370.43384606962945155No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT2293950.4211025744705571No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2250830.4131869952246405No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCC2110720.3874668698038293No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG1770960.3250968047622563No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA1711210.31412844066338064No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG1694460.3110536272967502No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1637880.30066718310069357No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1510410.277267394453268No Hit
AACGATGCCGACTGGCGATGCGGCGGCG1485150.27263039232544206No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG1348940.2476261935989508No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGAT1341750.2463063184881405No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1328700.24391071762637773No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC1302750.23914705154494134No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGC1263490.2319400561554542No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGT1247480.2290010852897973No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC1205960.22137921955949913No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1130540.2075342987170355No Hit
GAGGTGGAGCACGAGCGTACGCGTTAGGACCCGAAA1111080.2039620080833264No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1105290.20289913229868223No Hit
GACGTACGCAGTTTTATCCGGTAAAGCG1101100.20212997002965644No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATA1084210.1990294567304094No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1039950.19090460660461467No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT947290.1738949226313625No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC946300.17371318739357358No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC946020.17366178752834036No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT913020.1676039462687103No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA909040.16687333389860948No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC878460.16125973433135227No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTT878070.16118814166192028No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC877570.16109635618828952No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG874550.16054197192755976No Hit
TAGCTCTTTCTCGATTCCGTGGGTGGTGGT831310.15260436416797174No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG815850.14976635732330867No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCG807040.14814909727793474No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA760890.13967729806181572No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATT757620.13907702106427056No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCC749080.1375093251746572No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTG747240.137171554631696No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC742640.13632712827429302No Hit
TGGAATGAGTCCACTTTAAATCCTTTAACGA738500.13556714455263036No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA735560.1350274459676815No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG734760.13488058920987228No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGC734730.13487508208145443No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT734120.1347631038036249No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGA727180.13348912142963No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC694170.12742944446052729No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACG688240.1263408687432665No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGAT666370.12232617212665713No Hit
TGGGGGGGCCCAAGTCCTTCTGATCGAGGCC648060.11896498808229876No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTG639440.11738260651690446No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGC627730.11523299072447211No Hit
ATGTACACGGAGTCGACCCGCAACGCGA601360.11039222484518589No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT601340.11038855342624067No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC598900.10994064031492257No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG594280.10909254253857435No Hit
CCAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAG565740.10385342770373066No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGT564590.10364232111437992No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTTC564320.10359275695861932No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTT563640.10346792871448147No Hit
AGCTACCATCTGTGGGATTATGACTGAAC556570.10217008211734255No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT555940.10205443242056779No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTG552720.1014633339703857No Hit
CGGGTGTTGACGCGATGTGATTTCTGCCCA552100.10134951998308359No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCC551290.10120082751580174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)