FastQCFastQC Report
Fri 23 Jun 2023
ERR1190999_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1190999_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59543450
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG5866470.9852418695927092No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC3527340.5923976524705908No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT2684890.4509127368333545No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC2680390.45015698620083316No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC2676070.44943146559361274No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG2507530.42112608523691525No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGC2459690.41309161629028884No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT2161620.3630323738379284No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC2098260.3523914049320286No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1957790.32880022907641393No Hit
CGCGGCGTGGGAAATGTGGCGTACGGAA1925910.3234461557064631No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1588990.26686226612666886No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG1565550.26292564505415794No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATA1560440.26206744822478373No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT1511130.2537861007382004No Hit
GGGCCGCCGGTGAAATACCACTACTCTCAT1417820.2381151915114089No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1413010.2373073780575361No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG1378570.23152336654997316No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCT1262590.21204515358112436No Hit
TTGAAAGTCAGCCCTCGACACAAGGGTTTGT1226690.20601594297945447No Hit
TAGCTCTTTCTCGATTCCGTGGGTGGTGGT1217350.2044473405555103No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1143950.19212020801616297No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC1136610.19088749476222827No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1117790.1877267776724392No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1091090.18324265725281286No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA1065710.17898022368539276No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTT1054890.17716306327564157No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA1048420.17607646181066094No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGT1013980.170292450303098No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC986080.16560679638146597No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTC982010.1649232619204967No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA969790.1628709790917389No Hit
ATAATCCACCTATAACTTCTCTGTTAACCCAA969720.16285922297078856No Hit
CTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC926680.1556308880321849No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC918250.154215115180595No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG913010.15333508555517023No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT891550.14973099476096868No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCC883540.14838575863508077No Hit
CTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA882260.14817078956627472No Hit
AGCTAGGAATAATGGAAT873670.14672814558108407No Hit
AATAATCCACCTATAACTTCTCTGTTAACCCAA850860.14289732959712612No Hit
TGAAAGTCAGCCCTCGACACAAGGGTTTGT850280.14279992173782338No Hit
CGCGGCGTGGGAAATGTGGCGTACGGAAG848850.14255976098126663No Hit
TGGAATGAGTCCACTTTAAATCCTTTAACGA840120.14109360475417532No Hit
TCAAAAAGTAAGTTTAGATTATAGCCAAAAGAGG839510.14099115855732242No Hit
TCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC829720.1393469810701261No Hit
AAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGT826860.13886665955701258No Hit
TAATCCACCTATAACTTCTCTGTTAACCCAA818060.13738874720897093No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT807630.13563708518737158No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT794730.13347060004081054No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA782160.13135953660730104No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGAT770020.1293206893453436No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGAC748800.1257569052515432No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT748420.1256930863092414No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGTG735770.12356858730893155No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAA731150.12279268332620967No Hit
AACGATGCCGACTGGCGATGCGGCGGCG731040.12277420942185917No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC705200.1184345213453369No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCGTT687230.11541655715280187No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT684450.11494967120648872No Hit
AACGATTAAAGTCCTACGTGATCTGAGTT680340.11425941896211927No Hit
ATAATCCACCTATAACTTCTCTGTTAACCCA677070.11371024016915379No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT668720.11230790288436426No Hit
GAGGTGGAGCACGAGCGTACGCGTTAGGACCCGA666530.11194010424320391No Hit
CGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCG659720.11079640161932168No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT655740.11012798217100285No Hit
GGAATGCCTAAAGGAAAGATCCAAAAAGAT654900.10998690871959887No Hit
TAAGTCAGAATCCCGCCCAGGCGGAACGATAC654880.10998354982789879No Hit
CGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGT645110.10834273123240257No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT641770.10778179631848676No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT640890.1076340050836826No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT640360.10754499445363008No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACAC636590.10691184336816224No Hit
CGACGTACGCAGTTTTATCCGGTAAAGCG633310.10636098512934672No Hit
CAAAAAGTAAGTTTAGATTATAGCCAAAAGAGG632380.10620479666529233No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC625430.10503758179950942No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATA624460.10487467555205483No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACA618970.10395265978037888No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTA610780.10257719362919011No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC601790.10106737180999757No Hit
ATCGACACTTCGAACGCACTTGCGGCCCCGGGT597040.1002696350312251No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)