FastQCFastQC Report
Thu 22 Jun 2023
ERR1191000_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1191000_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48420348
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length1-51
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGTCGGTTTCTATCTATTTACGATTTCTC3455770.7137020163506467No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT2968290.6130253338947501No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGAC2207840.4559735919287486No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2120560.43794811222752883No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1943900.4014634508616088No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1870550.3863148608514751No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG1824720.37684983181037857No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC1499510.30968591964683934No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1419410.2931432876112332No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1400190.2891738820216658No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG1397340.28858528649979964No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1243330.2567784105971316No Hit
ACGTACGCAGTTTTATCCGGTAAAGCGAATG1243250.2567618886175705No Hit
TGGAATGAGTCCACTTTAAATCCTTTAACGA1216190.25117332903100986No Hit
GGTCGGTTTCTATCTATTTACGATTTCTC1114190.23010780509053758No Hit
ACGATTAAAGTCCTACGTGATCTGAGTT1104900.22818919021399844No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA1031210.2129703817907298No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1022610.21119426898790566No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTC1008120.2082017254398915No Hit
AACGATGCCGACTGGCGATGCGGCGGCG1008100.20819759494500123No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG972540.20085357503006793No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCT954450.19711754240180182No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATC937000.19351368561002494No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC919060.18980863169343598No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC896450.18513910721996463No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC866220.17889586419329329No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT860820.17778063057291535No Hit
AACGATTAAAGTCCTACGTGATCTGAGTT833930.1722271801929222No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCT818150.16896821972448442No Hit
ATTAAATCAGTTATGGTTCCTTTGGTCGCT796030.16439989237582514No Hit
ACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGC792660.1637039039868115No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG791510.1634664005306199No Hit
CAACTTCTTAGAGGGACAAGTGGCGTT753250.15556476380549764No Hit
ATGAGAGGTGTAGAATAAGTGGGAGGCCC717140.1481071552810814No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT690800.14266729351057122No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC663380.1370043850159854No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCC659740.13625263494595288No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG632510.13062896615282485No Hit
TTAAAGCATCTGGCCTACACCCAGAAGAT632150.13055461724479966No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCG616370.12729565677636187No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA591970.12225645301020968No Hit
GGCCGCCGGTGAAATACCACTACTCTCAT572780.1182932431629777No Hit
TTAAAGCATCTGGCCTACACCCAGAAGATT566360.116967354303195No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT564990.11668441540321024No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC563010.11627549640907166No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCC560300.11571581435143755No Hit
TAATCCACCTATAACTTCTCTGTTAACCCAA541160.11176293074143127No Hit
ACGGTGGCCATGGAAGTCGGAATCCGCT535590.11061258791448586No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACAC523170.10804755058761659No Hit
ACGTACGCAGTTTTATCCGGTAAAGCG522020.107810047131425No Hit
AGTGCGGTAACGCGACCGATCCCGGAGA521050.107609718129246No Hit
CAACTTCTTAGAGGGACAAGTGGCGT505640.10442717181627856No Hit
AGTTTTATCCGGTAAAGCGAATGATTAGAGGT500270.10331813393823605No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA498970.10304965177036728No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT497630.10277290861271794No Hit
GGCCGCCGGTGAAATACCACTACTCTCA495490.10233094565945705No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGC492310.10167419697190115No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC486060.10038341731868593No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)