FastQCFastQC Report
Thu 22 Jun 2023
ERR1191019_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1191019_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56038006
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTGAACCCCATTCGTGATGGGGATCGGGGATT6036871.077281372217277No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG4875310.8700006206502066No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC3580120.638873553066824No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG3240260.5782254279354623No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC3232190.5767853338678753No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3078910.5494324690996321No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA2439370.4353063526207553No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2367350.4224543607065533No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG2365430.42211173609567765No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2285210.4077964515725274No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATA1938450.3459170192458311No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1873810.33438199067968266No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG1784650.31847136031214246No Hit
GGGCCGCCGGTGAAATACCACTACTCTCAT1681480.30006064098711865No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTC1518120.27090899701177806No Hit
AGCTAGGAATAATGGAAT1496810.26710622073169416No Hit
AACGATGCCGACTGGCGATGCGGCGGCG1417840.2530139991062494No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGT1289950.230191987916201No Hit
CGCGGCGTGGGAAATGTGGCGTACGGAA1283480.2290374143576772No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG1281570.22869657424998313No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1239030.22110529771526846No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGC1211940.21627107859619418No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1197550.21370317851780807No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT1188890.21215779876250415No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC1184160.21131372875758644No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC1164840.2078660686106497No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT1124000.20057815761681455No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGAT1118480.19959311186054696No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1084890.19359896567340387No Hit
CGACGTACGCAGTTTTATCCGGTAAAGCG1072010.19130052557544605No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1062610.18962309258470045No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT1002220.1788464778707508No Hit
AGCTAGGAATAATGGAATA984620.1757057522710569No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT973540.17372852274579506No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT962980.17184408738597873No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG924860.1650415612575508No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG922690.164654324067134No Hit
AGGAATAATGGAAT890510.1589117928286028No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC866590.15464326121810973No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGT858930.15327633178097022No Hit
ACCGCAGCTAGGAATAATGGAAT826160.147428514854722No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC823990.1470412776643052No Hit
GAAGCTACCATCTGTGGGATTATGACTGAAC817270.14584209152624025No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC807480.1440950629114105No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA800420.1428352036651697No Hit
TCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC797070.14223739509931885No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG791890.14131302245122712No Hit
CGGGCCGCCGGTGAAATACCACTACTCTCAT785690.14020663047860768No Hit
AAGTCCTTCTGATCGAGGCC773410.13801526057154853No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT768550.13714799202526942No Hit
TGGAATGAGTCCACTTTAAATCCTTTAACGA766430.13676967735076082No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCC752070.13420713078191968No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT742050.13241905859391215No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT728650.13002782433050883No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATG719530.12840035742884928No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC718050.1281362509579659No Hit
TCTAAGTCAGAATCCCGCCCAGGCGGAACGATA715670.1277115392007346No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCG715560.12769190966573649No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTT708580.1264463264449488No Hit
GGGCCGCCGGTGAAATACCACTACTCTCA704360.12569326610229495No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCC701530.1251882517018896No Hit
CGCGGCGTGGGAAATGTGGCGTACGGAAG691600.12341624004251685No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA683180.12191368836357239No Hit
CCGACGTACGCAGTTTTATCCGGTAAAGCG676330.12069130368414609No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCC663900.11847316622936226No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC661480.11804131645940437No Hit
AATAATCCACCTATAACTTCTCTGTTAACCCAA632070.1127930926021886No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGTG626300.11176343426637986No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGA625290.1115831994450338No Hit
AGGAATAATGGAATA606710.10826759253353875No Hit
GGGCGAAGCTACCATCTGTGGGATTATGACTGAAC606130.10816409134900339No Hit
AGCTACCATCTGTGGGATTATGACTGAAC601390.107318236840904No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT574170.10246081918046834No Hit
CGGGCCGCCGGTGAAATACCACTACTCTCA572740.10220563522549322No Hit
TGGCGCTAAACCATTCGTAGACGACCTGCTT571250.10193974425142821No Hit
GGCGAAGCTACCATCTGTGGGATTATGACTGAAC567200.10121702046286231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)