FastQCFastQC Report
Thu 22 Jun 2023
ERR1191028_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1191028_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58914298
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length1-51
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC12167862.06534922982533No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC11158831.8940784120011074No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC10979321.8636087287333882No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT8239281.3985195919673015No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC6694301.1362776485938948No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3705650.6289899270292587No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC3498880.5938931836207231No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT3465460.5882205368890248No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC2861890.48577172217175535No Hit
AGGTCGGTTTCTATCTATTTACGATTTCTC2692170.45696377473597327No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT2308010.3917571927955417No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC2260770.38373876575767735No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC2121890.3601655407996205No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATA1865060.31657170895934295No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1708420.28998393564835484No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1683470.2857489704791187No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1677380.2847152655540426No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCC1599020.2714145893752311No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGAT1597560.27116677177414555No Hit
TAAACTTTAAGGATGTCTTTTGTTCCTGGG1589020.26971720854587794No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGT1583770.2688260836104675No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1478020.25087628134005774No Hit
GTGGGGGGGCCCAAGTCCTTCTGATCGAGGCC1428510.24247254885393013No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1420500.24111294680961826No Hit
TAAACTTTAAGGATGTCTTTTGTTCCTGG1407340.23887919363818952No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1374460.23329820547127625No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGAC1358350.2305637249551883No Hit
TGCCCTCGGCCGATCGAAAGGGAGTCGGGTT1347920.22879335675017295No Hit
GGGGGGGCCCAAGTCCTTCTGATCGAGGCC1336850.22691435617207897No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC1257690.21347788952691926No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATT1232480.2091987924561199No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG1225010.20793084897659306No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCC1189210.20185422560750874No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1177280.19982925027809037No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCT1168800.1983898713347989No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCT1140270.1935472438286543No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG1115290.18930718651693007No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1114350.18914763271897087No Hit
CCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTGC983910.16700699718088807No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC979550.1662669391392901No Hit
GGGCCGCCGGTGAAATACCACTACTCTCAT912650.15491146139091735No Hit
CGTTGAACCCCATTCGTGATGGGGATCGGGGATTG896740.15221092849141646No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA889700.15101597238755185No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATC875230.14855986232747778No Hit
CAGTGCGGTAACGCGACCGATCCCGGAGA872680.14812703021599274No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT872520.14809987212272308No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC862210.14634987248765996No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT841150.14277518846104217No Hit
TGACCCGCCGGGCAGCTTCCGGGAAACCAAAGT813180.13802761428134133No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT802060.13614012679910062No Hit
AACGATTAAAGTCCTACGTGATCTGAGTT798990.13561903088448918No Hit
CTCGCCCGTCACGTTGAACGCACGTTCGT791960.1344257721614539No Hit
AGCTACCATCTGTGGGATTATGACTGAAC787240.1336246084099992No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA784820.13321384224929575No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCC777410.13195608305474504No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATTG758820.1288006520929775No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT755450.12822863475348548No Hit
TCGACTGCATAATTTGTGGTAGTGGGG755060.1281624369011407No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG752170.12767189384145763No Hit
GACGTACGCAGTTTTATCCGGTAAAGCGAATG751300.12752422170930391No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC751290.12752252432847455No Hit
TTAAAGCATCTGGCCTACACCCAGAAGATT732050.12425676361279905No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTG729940.12389861625780553No Hit
CGACTGCATAATTTGTGGTAGTGGGGG723400.12278852919540856No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC708440.12024924747469622No Hit
TAGCTCTTTCTCGATTCCGTGGGTGGTGGT696580.11823615381108335No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG683810.11606859849199935No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATGC662480.11244808518298902No Hit
TTGGATAACTGTGGTAATTCTAGAGCTAATACATG652910.11082369172929804No Hit
TGGAATGAGTCCACTTTAAATCCTTTAACGA644920.10946748444664485No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAAG644910.10946578706581549No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA642470.10905162614345332No Hit
AGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGA639910.10861709665113892No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA637960.10828610738941505No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC630940.10709454604720912No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTAAT626950.10641729109629722No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC624920.10607272278793851No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATT620010.1052393088007261No Hit
TACCCGTCGCCGCGCTCTCTCTCTCCCCC611810.1038474565206565No Hit
GACGTACGCAGTTTTATCCGGTAAAGCG593250.10069711770137701No Hit
CGTCGCGGCGTGGGAAATGTGGCGTACGGAA590120.10016583750178946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)