FastQCFastQC Report
Thu 22 Jun 2023
ERR1719518_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719518_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41599973
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC730375217.55710754908423No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC40408049.71347745826662No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC38777329.321477203843378No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC36605518.799407153461374No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT23678995.6920685982176No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC12919723.1057039387982295No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC11604322.7895018104939635No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA7671471.8441045622794034No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA7620221.83178484274497No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC6316291.518339927768703No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC6245161.5012413589787668No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT5892861.4165538040132863No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT5804501.3953134056120662No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG4961231.1926041394305713No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC4651361.1181161103157446No Hit
GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC3489550.8388346790513541No Hit
GGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC3193740.7677264598224619No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA2866940.6891687165277728No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC2504170.6019643330056968No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG2009800.48312531356691024No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1811070.4353536479458773No Hit
TTGGTGCCTCTAGATAACCTCGGGCCGATCGCAC1766200.42456758325299876No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1663640.39991372109784784No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1506640.36217331198748615No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1489270.357997828508206No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT1429210.3435603191377071No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1339330.32195453588395356No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1212540.291476150717694No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1046850.2516467979438352No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT993820.23889919351630348No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC865140.20796648113209112No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG858790.2064400378336784No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG854900.20550494107291847No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC825520.19844243648908136No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGG817760.19657705066298958No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC693090.16660828121210558No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA678380.16307222122475898No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAATA645840.15525010076328655No Hit
TTGGTGACTGTAGATAACCTCGGGCCGATCGCAC604900.1454087482220241No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC594550.14292076583799707No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT569610.13692556963919184No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC563650.1354928764016265No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGC538010.12932941086283878No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATA530050.1274159480824663No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCG514280.12362508023743188No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG496810.1194255582810114No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAAT489020.11755296091177751No Hit
ACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCC485050.11659863336930532No Hit
CCGCCTGGATACCGCAGCTAGGAATAA463620.11144718771812663No Hit
AAACGATGCCGACTGGCGATGCGGCGGCGT461150.1108534373327598No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAA436560.10494237580394583No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA424670.1020842008719573No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCAC424020.10192795077054496No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT421010.10120439260862021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)