FastQCFastQC Report
Thu 22 Jun 2023
ERR1719523_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719523_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37199064
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length1-51
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC531203914.280034035264974No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC26622387.156733836098672No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC23864916.415459808343566No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC12304743.307809035195079No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC11820903.1777412463926513No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC11149522.997258210582933No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT9995042.6869063157072985No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT5797181.5584209323116303No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC5629021.513215493809199No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA5300701.4249552085504087No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC3642390.9791617337468491No Hit
AACGATGCCGACTGGCGATGCGGCGGCG3236940.8701670558162431No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2995070.8051466026134422No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2991740.8042514187991398No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2897600.7789443304272387No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC2377700.6391827493293917No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG2208610.5937273045364798No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1977730.531661226744845No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1855430.49878405542677096No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG1835690.49347747029333855No Hit
AAGTCCTTCTGATCGAGGCC1793320.48208739875820533No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1757600.4724850066119943No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1677170.45086349484492405No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1649550.44343857684161087No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1354270.3640602354940974No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1353750.3639204470306027No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1344450.36142038412579414No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1279460.3439495144286426No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1258730.33837679356663386No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1226240.32964270283789937No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1215640.3267931687743541No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1186350.31891931474404844No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC1141890.3069674011152539No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1084340.2914965817419492No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA1005910.2704127179113969No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT974030.26184260980330043No Hit
AGATAACCTCGGGCCGATCGCAC775220.20839771667373136No Hit
CCGCCTGGATACCGCAGCTAGGAATAA769240.20679014934354262No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG764140.2054191471054218No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC740460.19905339553704898No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACT719980.19354788066710496No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG702230.18877625523050795No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC678640.18243469781927846No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG672030.18065777138908656No Hit
AACCTCGGGCCGATCGCAC664700.1786872917017482No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCAC649320.17455277906992497No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT585120.15729428030769807No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC576940.15509530024733956No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC565550.15203339524886972No Hit
ACCGCAGCTAGGAATAATGGAAT557710.14992581533771926No Hit
CGAGGGGGGCCCAAGTCCTTCTGATCGAGGCC532470.14314069837886245No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT528010.14194174348042737No Hit
CTCGCCCGTCACGTTGAACGCACGTTCG496010.1333393764961398No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC491120.13202482729135337No Hit
CGACTGCATAATTTGTGGTAGTGGGGG474510.1275596611785716No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGC474020.1274279374341247No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC452850.12173693402608196No Hit
TTGGTGACTGTAGATAACCTCGGGCCGATCGCAC448340.12052453792923393No Hit
TCGGTTGGCCCCGGATAGCCGGGTCCCCG431880.11609969541169102No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA426630.11468836957833134No Hit
ATAAACGATGCCGACTGGCGATGCGGCGGCG418500.11250283071638577No Hit
ACGATGCCGACTGGCGATGCGGCGGCG416030.11183883551478607No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT409150.10998932661316425No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT397920.10697043344961583No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGAT394160.10595965532896204No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG394050.10593008469245355No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT382110.10272032651144127No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)