FastQCFastQC Report
Fri 23 Jun 2023
ERR1719529_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719529_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43631646
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC952313321.82620614404508No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC41222299.447796216535128No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC27916546.398232145539501No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC20124924.612459497860796No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC14851703.4038825855893675No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT13329093.0549133993248843No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT13178653.020433838320012No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10483442.4027147634998687No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC10388112.380865943035933No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC7269031.6659994903699027No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC6708991.5376431134411017No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC5715271.3098909905897202No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA4549851.0427866966100705No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG2950270.6761766448141792No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC2889980.6623586925874857No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2572120.589507899839488No Hit
AACGATGCCGACTGGCGATGCGGCGGCG2448700.5612210916819411No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2314430.5304475563447686No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT2181650.5000155162608351No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2134580.48922747493871765No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1949320.44676746781453075No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1664230.38142727872333765No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1477780.3386945337794499No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1456810.33388838917514135No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT1406990.3224700713789253No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT1383550.3170978239051536No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC1234760.28299642878474035No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1224620.2806724275311548No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1194240.2737095914282033No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1169350.26800501635899776No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACT1167860.26766352110575886No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1131820.25940346142338977No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1113660.2552413447798875No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC1086560.24903025661695183No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC1021180.23404571993456308No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG1006930.2307797418415065No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG930210.2131961741713801No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT928710.21285238700368994No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT824480.18896376267812587No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC737670.1690676533266703No Hit
CGGGCGTGGGGGTGGGGGCCGGGCCGC714750.16381458540436453No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG706350.1618893772652996No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCC693460.15893509953761542No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC693050.15884113104511344No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG675650.15485319989990753No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG658250.15086526875470158No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCCG651240.14925863672436288No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG645360.1479109910270174No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC644390.14768867532524443No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGTCCG643710.14753282514255822No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT640640.146829207406019No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA630000.1443906104298701No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA629700.14432185299633207No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT595730.1365362196053754No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC571170.13090727771306176No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA562790.12898665340289936No Hit
CGACTGCATAATTTGTGGTAGTGGGGG515580.11816652527846416No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCC514650.11795337723449627No Hit
CGCGTCTCTCGGGGTCGGGGGTGCGTGGCGG491360.1126155084774936No Hit
CTCCGGGGCTACGCCTGTCTGAGCGTCGCT487060.11162998526344846No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA470590.10785520216221042No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTG469120.10751829073787406No Hit
AAACGATGCCGACTGGCGATGCGGCGGCGT462450.10598958379887846No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT458480.10507969376172516No Hit
CCGCCTGGATACCGCAGCTAGGAATAA453610.10396353142395774No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC443910.10174037440622799No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)