FastQCFastQC Report
Thu 22 Jun 2023
ERR1719531_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719531_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40726173
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC669291116.43393058316577No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC33010508.105475562361335No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC25607776.287791882630367No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC12744043.1292014597099507No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT12386073.0413046666574832No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC11901022.9222043524688655No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC11836412.9063398615922003No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT11571022.8411753787914225No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC9376422.302308149601977No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT7623721.8719460824369625No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6522961.601662891330349No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC5480391.3456678092488583No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA4730361.1615036846206983No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG3666440.9002662734846213No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC3397050.8341196213059352No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2203780.5411213079117451No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC2080880.5109441537755094No Hit
AACGATGCCGACTGGCGATGCGGCGGCG2042270.5014637638552486No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1942240.4769021631372041No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1850810.4544522265816629No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT1809720.44436289164709875No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1577300.387293939943731No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1370880.3366090891967679No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC1312980.32239218745154374No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG1298430.31881954633940196No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC1279480.3141665189115609No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1273940.31280621432315775No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1236510.30361556436937986No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT1222410.30015341731225276No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC1215780.29852547156836956No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1214990.29833149311623264No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1086010.2666614415255762No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1085780.2666049667863465No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC1074540.2638450708344238No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1073400.26356515256172No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT1061130.2605523479949859No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT1049560.2577114230693859No Hit
GGGGGGGGATGCGTGCATTTATCAGA1016530.24960115943130726No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG999770.245485869737871No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG979130.24041787574786366No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGTCCG875120.2148790164988004No Hit
CGGGCGTGGGGGTGGGGGCCGGGCCGC849950.20869871568831178No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC831690.20421511247815993No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC821910.2018137083491739No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCC821200.20163937328459514No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACT816120.20039201817465147No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG778600.19117926940987065No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC767880.18854705547707612No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG734120.1802575459275292No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCC718060.17631413587522696No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG639210.15695312201320757No Hit
AAACGATGCCGACTGGCGATGCGGCGGCGT638170.1566977579749514No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG629700.15461801431723035No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT626260.1537733486522291No Hit
CGGGCCGCCGGTGAAATACCACTACTCTCAT621230.1525382706595093No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC596320.14642181085858474No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA587420.14423648399273853No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA585070.14365945948321734No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC577580.14182034732308385No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTC550670.13521280283320505No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT550560.1351857931753126No Hit
CGCGTCTCTCGGGGTCGGGGGTGCGTGGCGG546060.13408085262516564No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC544960.13381075604624082No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC540110.13261987567552688No Hit
ACGATGCCGACTGGCGATGCGGCGGCG540080.1326125094051926No Hit
GGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG514500.12633153623346835No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC512730.12589692628374385No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA503680.1236747680662261No Hit
TTGGTGACTGTAGATAACCTCGGGCCGATCGCAC483140.11863132831066647No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA470160.1154441886793537No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGC456960.11220302973225596No Hit
CGACTGCATAATTTGTGGTAGTGGGGG453970.11146885812226943No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGC453480.11134854237347565No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCC450820.11069539973716656No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT442300.10860337896222166No Hit
CTCGACTGCATAATTTGTGGTAGTGGGGG437380.10739531062739432No Hit
TAAGTGGGAGGCCCCCGGCGCCCGGCCCCG432450.10618478686912221No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC419830.10308604248182121No Hit
AAACGATGCCGACTGGCGATGCGGCGGCGTT419410.10298291469714083No Hit
CGCTGAGAAGACGGTCGAACTTGACTATC412020.10116835677145505No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCCCG410580.10081477579540804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)