FastQCFastQC Report
Fri 23 Jun 2023
ERR1719532_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719532_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39825021
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC750807218.852650448068818No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC412106810.347936790792904No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC17036854.277926181131204No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC16450454.1306820654281635No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT13786113.4616704910212097No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC13566353.406489101411899No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC10520002.641555418137758No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT8299862.084081763572705No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC7973672.0021759687207696No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT7512241.8863116230371857No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6991281.7554993881861356No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC6605821.6587109897569168No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC4884511.2264927619247206No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC3249920.8160497894024964No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2563680.6437360070695255No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT2197520.5517938082192096No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2097790.5267517624158943No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA2080310.5223625619682661No Hit
AACGATGCCGACTGGCGATGCGGCGGCG1720870.4321077445257342No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1700780.42706317719204717No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1666350.41841785846139284No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC1540030.3866991055698376No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1486540.37326785088198694No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1442680.36225467401511224No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1438760.36127036819390507No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC1368440.3436131270338815No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT1320350.3315378038344286No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC1275910.32037898988176305No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC1205560.3027142157690262No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA1158700.29094774363081943No Hit
TTTGGTGCCTCTAGATAACCTCGGGCCGATCGCAC1150800.28896406608297837No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1134790.2849439803183029No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1069680.26859496194615945No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1055830.2651172487768431No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACT987680.24800489119641642No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC967000.24281217579270076No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGC889820.22343239944556462No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC828150.20794715965121524No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC818640.20555921364109261No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG789440.1982271396667939No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT721750.18123028736130484No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT718290.1803614868150352No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA681040.1710080705293288No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCC674280.16931064518459388No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA649240.16302314065320894No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG639720.16063268365884856No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT625370.15702942127764352No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG614390.15427236058456817No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC576240.14469295571746216No Hit
CGGGCGTGGGGGTGGGGGCCGGGCCGC574030.14413802820091418No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT564460.14173501628536492No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCCC551620.13851091252406372No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA550950.13834267658013288No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG541840.1360551699395212No Hit
GCCGCCTGGCTACCGCAGCTAGGAATAATGGAAT529950.13306960968080844No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC520320.13065153185983253No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC491780.12348518284522687No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCC484290.1216044556511345No Hit
TTGGTGACTGTAGATAACCTCGGGCCGATCGCAC474860.11923659751491406No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA463160.11629874595671902No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGTCCG451250.11330816372953074No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA448870.11271054948094063No Hit
CTTTGGTGCCTCTAGATAACCTCGGGCCGATCGCAC445530.11187188074552427No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC444410.11159065051089365No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCC437850.1099434448509142No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT432160.10851469481962107No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG419520.10534081074307532No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA415010.10420835685183945No Hit
CGGCGACGACCCATTCGAACGTCTGCCCT410590.10309850181874354No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC402520.1010721375388603No Hit
TACCCGTCGCCGCGCTCTCCCTCTCCCC398750.10012549648121967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)