FastQCFastQC Report
Thu 22 Jun 2023
ERR1719533_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719533_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50368881
Total Bases1.6 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1169731923.22330527851115No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC596917811.850924383251634No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC45324088.998429010166019No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC35345837.0173943312340015No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT22689264.504618635462638No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC14353372.849650362492667No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC12198622.421856463319088No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC11153142.2142917965558935No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA8338901.6555658641691882No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC7741661.536992652268769No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT7263901.4421404358774617No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6669431.3241171667085476No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC6035311.1982219736031063No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA5783361.1482010092699895No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC5204231.033223271328978No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC5010290.9947193387123292No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAG3248580.6449577468278479No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA2930770.5818612488135283No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2440240.48447373686939754No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA2399370.4763595998886694No Hit
GCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC2366010.4697364628767512No Hit
TTGGTGCCTCTAGATAACCTCGGGCCGATCGCAC1961180.38936342461131906No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT1708830.3392630461653496No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1593540.3163739134883699No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1524980.30276233454541107No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1281890.25450039281198245No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1191380.23653096442622976No Hit
CCGCCGCGGGCGCACCACCGGCCCGTCTCGC1185120.23528813356008446No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1152870.22888537071133266No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1149670.2282500578085108No Hit
GGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1095820.21755893286571126No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG1044680.20740583853748906No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC1035020.20548798771209548No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT971950.19296636746804044No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC837480.1662693280797721No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGG837170.16620778214231124No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA824550.16370226688180745No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT819060.16261230818290365No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC771540.15317791157599867No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT704490.1398661209090589No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC637870.12663970041343584No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG621520.12339364855058026No Hit
TTGGTGACTGTAGATAACCTCGGGCCGATCGCAC600480.11921646621452639No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC573850.11392947165135552No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT538900.10699066354084778No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATA536250.1064645450431984No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)