FastQCFastQC Report
Thu 22 Jun 2023
ERR1719536_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719536_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48745145
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1356407427.82651277373367No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC513889910.542381195091327No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC40161908.239158997270394No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC16603653.406216147269641No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC13626182.795392238550116No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC13532342.7761410905639936No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11232572.3043464123452706No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC10937192.243749608294323No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC10774282.210328844031544No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC7398941.5178824475750354No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC7114301.4594889398728839No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT6728931.3804308100837528No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT6520631.3376983492407295No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCC4971851.0199682450426601No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC3569430.7322636951844127No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC2922660.5995797119897787No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2633000.5401563581357692No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCG2392330.4907832359509855No Hit
AACGATGCCGACTGGCGATGCGGCGGCG2229750.45743017073802944No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA1868470.383314071586001No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT1691810.3470725135805833No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1573950.3228936953618663No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1520630.3119551700995043No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1416470.29058688819163425No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC1360680.2791416457987765No Hit
CTCGCTTCTGGCGCCAAGCGTCCGTCC1340250.27495045916880545No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1247770.25597831332740933No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1195150.24518339211012707No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1176310.2413183918111229No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1144670.23482748897351727No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC1135740.23299551165557103No Hit
TTTGGTGCCTCTAGATAACCTCGGGCCGATCGCAC1134200.23267958275639553No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG1066390.21876845376088225No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1027240.21073688466820645No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC951960.19529329536305615No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGC949790.19484812282330885No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCC928350.1904497360711513No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT921430.18903010751121985No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC915440.18780126718260864No Hit
GGGGGGCCCAAGTCCTTCTGATCGAGGCC914050.18751611057880738No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT866760.17781463159048969No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA862310.176901720161054No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA859110.1762452445264036No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG817260.16765977411699157No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA781110.16024365093180049No Hit
AGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT756000.15509236868615325No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA746700.15318448637295057No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT739340.15167459241325468No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT693310.14223160070608057No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC690220.1415976914213713No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC641340.13157002610208668No Hit
CTTTGGTGCCTCTAGATAACCTCGGGCCGATCGCAC637740.130831491013105No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG612710.12569662065832404No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT552430.11333026089059742No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCT552250.11329333413614834No Hit
AAGTCCTTCTGATCGAGGCC550670.1129691992915397No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGTCCG527490.10821385391304099No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG522150.10711836019771814No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCC505420.10368622352031161No Hit
CGGGCCGCCGGTGAAATACCACTACTCTCAT489790.10047975034231614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)