FastQCFastQC Report
Thu 22 Jun 2023
ERR1719537_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1719537_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24213954
Total Bases761.9 Mbp
Sequences flagged as poor quality0
Sequence length1-51
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC288971911.934106259555957No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC14193305.861620122017247No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC14075575.812999396959291No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC7302433.0157941160704276No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC7171872.9618747933526266No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC7160632.957232841856394No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT5699072.3536304727431134No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC2695551.1132217398281998No Hit
AACGATGCCGACTGGCGATGCGGCGGCG2607841.0769988247272626No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA2599261.0734554133538041No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2376050.9812730295927712No Hit
TCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2264050.9350187086338729No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC2140760.8841017869283142No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1939070.8008068405515265No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1863070.7694199799008457No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATA1476360.6097145472399923No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG1461940.6037593034165342No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCAC1404100.5798722505213316No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCA1381920.5707122430314354No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCAC1204110.4972793786590988No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1177430.48626093863067554No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1082480.44704801206775235No Hit
GGGGCCCAAGTCCTTCTGATCGAGGCC1074600.44379369020028697No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC1015150.4192417314413003No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA998190.4122375056960957No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT985020.4067984931333396No Hit
GGGCCCAAGTCCTTCTGATCGAGGCC901570.3723348941688747No Hit
AAGTCCTTCTGATCGAGGCC888740.36703629650902947No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT885310.36561975792966317No Hit
TGACTCTAGATAACCTCGGGCCGATCGCAC847650.35006674250723363No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG834120.3444790553413953No Hit
CTCGGTTGGCCCCGGATAGCCGGGTCCCCG822270.33958518298994045No Hit
GTGACTCTAGATAACCTCGGGCCGATCGCAC813360.33590548656365665No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC792400.32724932078420566No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT755200.31188627846571443No Hit
AACGATGCCGACTGGCGATGCGGCGGCGT754900.31176238296314596No Hit
CTGGATACCGCAGCTAGGAATAATGGAAT751400.3103169354331804No Hit
ATACCGCAGCTAGGAATAATGGAAT718120.2965727943482506No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC701610.2897544118568987No Hit
CGGGGCTACGCCTGTCTGAGCGTCGCT697490.28805291362162494No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA696680.28771839576469005No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC695670.28730128090604284No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGA664650.27449048594046227No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT652890.2696337822397779No Hit
GATACCGCAGCTAGGAATAATGGAAT631560.2608248120071592No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAAT618640.2554890456965434No Hit
ACTCTAGATAACCTCGGGCCGATCGCAC605250.24995917643190366No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCA604640.2497072555766811No Hit
TCTAGATAACCTCGGGCCGATCGCAC602730.2489184542103285No Hit
TGGATACCGCAGCTAGGAATAATGGAAT602690.24890193480998601No Hit
GGCCCAAGTCCTTCTGATCGAGGCC580460.23972127806966181No Hit
CTAGATAACCTCGGGCCGATCGCAC578000.23870533494860033No Hit
TGGATACCGCAGCTAGGAATAA569150.23505041762283022No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACT536080.22139300338969836No Hit
ACCGCAGCTAGGAATAATGGAAT515810.2130217972661549No Hit
GGGGCTACGCCTGTCTGAGCGTCGCT504150.20820639206632674No Hit
CTCTAGATAACCTCGGGCCGATCGCAC492760.20350249281881017No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAT491770.2030936376603342No Hit
ATAAACGATGCCGACTGGCGATGCGGCGGCG485860.2006528962597352No Hit
TACCGCAGCTAGGAATAATGGAAT483610.1997236799904716No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC481650.1989142293736909No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATT476830.19692364163242404No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT465260.1921454050833664No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA448930.1854013598935556No Hit
AGATAACCTCGGGCCGATCGCAC440700.1820024932730937No Hit
TAGATAACCTCGGGCCGATCGCAC438510.18109805610434382No Hit
GGATACCGCAGCTAGGAATAATGGAAT414880.1713392203520334No Hit
GCCTGGATACCGCAGCTAGGAATAATGGAAT402220.16611083014364364No Hit
CCGCCTGGATACCGCAGCTAGGAATAA400320.1653261586273766No Hit
GACTCTAGATAACCTCGGGCCGATCGCAC371300.1533413336789192No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA349980.14453649329638604No Hit
AGCCTCGGTTGGCCCCGGATAGCCGGGTCCC339570.14023731935725986No Hit
CTGGATACCGCAGCTAGGAATAA333890.13789156450863002No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT324920.13418708898183254No Hit
GCCCAAGTCCTTCTGATCGAGGCC296830.12258634009133741No Hit
CGCTGAGAAGACGGTCGAACTTGACTATC284280.11740337823388942No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTG282420.11663522611796487No Hit
CCTGGATACCGCAGCTAGGAATAATGGAAT281500.11625527991008822No Hit
CGAGGGGGGCCCAAGTCCTTCTGATCGAGGCC278170.11488003983157812No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC275310.11369890270709195No Hit
ACGATGCCGACTGGCGATGCGGCGGCG271920.11229888352806816No Hit
GGATACCGCAGCTAGGAATAA269110.11113839565401008No Hit
GATGCCGACTGGCGATGCGGCGGCG268060.11070476139502042No Hit
AACGATGCCGACTGGCGATGCGGCGGCGTT267090.11030416593671567No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC261430.10796667078825704No Hit
CCTCCGGGGCTACGCCTGTCTGAGCGTCGCT255130.10536486523431902No Hit
CGCCTGGATACCGCAGCTAGGAATAA252950.10446455791565475No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGAT250240.10334536854245283No Hit
AAACGATGCCGACTGGCGATGCGGCGGC249460.10302324023577479No Hit
AAACGATGCCGACTGGCGATGCGGCGGCGT247610.10225921796993584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)