FastQCFastQC Report
Thu 22 Jun 2023
ERR1802076_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1802076_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26929369
Total Bases882.9 Mbp
Sequences flagged as poor quality0
Sequence length1-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGTCGCTGGTTCAAGTTCAACTAGAATGTGGCT386117714.338163660648714No Hit
CAGTACGATGTACACATTTTTGAGTGCCTATA281848510.466212557746896No Hit
CGGTCGCTGGTTCAAGTTCAACTAGAATGTGGCT26718179.921572985984186No Hit
GAGGACACTGCGATCCATTACGAAACAGCT23079358.570327065591474No Hit
CTCCCAGAGAGGGTGATAGGCCCGTAGAGCGGCGC5932682.2030519913036213No Hit
CTCCCAGAGAGGGTGATAGGCCCGTAGAGCGGCGCA5331141.9796750529134197No Hit
CAGTACGATGTACACATTTTTGAGTGCC4747701.7630194008630504No Hit
CAGTACGATGTACACATTTTTGAGTGCCTA4292021.593806375485441No Hit
CCGGTCGCTGGTTCAAGTTCAACTAGAATGTGGCTT3247201.2058210498730957No Hit
CCAGTACGATGTACACATTTTTGAGTGCCTATA3110831.1551811704165813No Hit
AGTACGATGTACACATTTTTGAGTGCCTATA1961530.7283980549265748No Hit
TGGAGTTGAAATCTGGATAATTTTGCTGATCGTAT1575690.5851195399342628No Hit
TTTCGATCCTCTCAGACTACCCTTGCTTGGAGGT1564180.5808453959689884No Hit
TGCCCGGTTCCGTGTACTGGAGAGTTCGTTATCTGCCG1491970.5540308055491385No Hit
TTCGCGCCGCAAGGCGCAAGGTCGCCCGACAAC1458210.5414943068290979No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1278900.47490901105035177No Hit
CGGTCGCTGGTTCAAGTTCAACTAGAATG1157210.42972042902304913No Hit
ATCTTGCATGGAATAATGGAATATGACCT1091220.40521558451666656No Hit
TGCCCGGTTCCGTGTACTGGAGAGTTCGTTATCTGCC1083420.4023191185801643No Hit
AGGACACTGCGATCCATTACGAAACAGCT901400.33472748655937684No Hit
CCGGTCGCTGGTTCAAGTTCAACTAGAATGTGGC881190.32722266904954217No Hit
ATTTCGATCCTCTCAGACTACCCTTGCTTGGAGGT875070.3249500573147481No Hit
TTCGCGCCGCAAGGCGCAAGGTCGCCCGACAA820890.3048307593096593No Hit
CTCCCAGAGAGGGTGATAGGCCCGTAGAGCGGCG806430.29946115707352816No Hit
CAGTACGATGTACACATTTTTGAG797200.2960336723820005No Hit
CGGTCGCTGGTTCAAGTTCAACTAGAATGTGGC792370.29424009155208947No Hit
CAGTACGATGTACACATTTTTGAGTGCCT765360.28421014989248355No Hit
ATTTCGATCCTCTCAGACTACCCTTGCTTGGAGG759550.2820526541115761No Hit
TTTCGATCCTCTCAGACTACCCTTGCTTGGAGG726610.26982065565665503No Hit
CCGGTCGCTGGTTCAAGTTCAACTAGAATG722820.26841327028494427No Hit
CGGTCGCTGGTTCAAGTTCAAC713680.2650192063542224No Hit
AGAGGACACTGCGATCCATTACGAAACAGCT710460.2638234858009484No Hit
CAGTACGATGTACACATTTTTGAGTGC669950.24878043002047318No Hit
AGTACGATGTACACATTTTTGAGTGCCTA646600.24010959930030296No Hit
CCGGTCGCTGGTTCAAGTTCAAC640090.23769216426868375No Hit
CGCATAAGGCTCAGTATAACAGCTATAATTTACAAGATC615180.22844204036121307No Hit
ATTTCGATCCTCTCAGACTACCCTTGCT613860.22795186920272809No Hit
GCAGTCGGGCGCGTGATGGATTCCCCCGGACACCGG612790.22755453349092583No Hit
GAGGACACTGCGATCCATTACGAAACAGCTT606950.22538589745641646No Hit
CAGTACGATGTACACATTTTTGAGTGCCTAT592050.21985290483412367No Hit
CTGCCCGGTTCCGTGTACTGGAGAGTTCGTTATCTGCC576110.2139337167536306No Hit
TGGAGTTGAAATCTGGATAATTTTGCTGATCGTA542390.20141207170505923No Hit
CGCTGGAGTTGAAATCTGGATAATTTTGCTGA541630.20112985194714367No Hit
GAATAATCTTGCATGGAATAATGGAAT534180.19836335563599727No Hit
CATTTCGATCCTCTCAGACTACCCTTGCT519980.19309030226441623No Hit
TTTCGATCCTCTCAGACTACCCTTGCT501550.18624647313496281No Hit
TCGCTGGTTCAAGTTCAACTAGAATGTGGCT496770.18447145939438833No Hit
CATAAGGCTCAGTATAACAGCTATAATTTACAAGATC459420.17060184365998327No Hit
CATGTGGCAAAAAACCTACAAGACCTGCTAGCGTGAT442750.16441157607517654No Hit
AATCTTGCATGGAATAATGGAATATGACCT440990.16375801453052985No Hit
ACCGGTCGCTGGTTCAAGTTCAACTAGAATGTGGCT407070.1511621011246123No Hit
TGCCCGGTTCCGTGTACTGGAGAGTTCGTTATCTGC394370.14644606043312788No Hit
CTATTACCTTGAACAAATTAGAGTGCTCTAAGCAGGCT389480.144630199096013No Hit
CTCTAAGGTCGTAACCAAACCGAGCTGATAGTGT385950.14331936258885233No Hit
CGGTCGCTGGTTCAAGTTCAACTAGAATGTGGCTT358780.13323000624336945No Hit
AAGTTCAACTAGAATGTGGCT355220.1319080294826069No Hit
AACGGTCGCTGGTTCAAGTTCAACTAGAATGTGGCT344390.12788639793230952No Hit
CATGAACACCGACACGTTGAACGCATATTGCACATCGT342350.12712886068737814No Hit
CTCCCAGAGAGGGTGATAGGCCCGTAGAGCG335350.12452946818026073No Hit
GAGGACACTGCGATCCATTACGAAACAGC324830.12062295258385No Hit
TAATCTTGCATGGAATAATGGAATATGACCT319630.11869197529284847No Hit
TTTCGATCCTCTCAGACTACCCTTGCTTGGAGGTTG318050.11810525526981341No Hit
CATGAACACCGACACGTTGAACGCATATTGCACATCG313680.11648249166179869No Hit
TGGAGTTGAAATCTGGATAATTTTGCTGATCGT313200.11630424760416778No Hit
CTCCCAGAGAGGGTGATAGGCCCGTAGAGCGG312570.1160703022785272No Hit
ATTTCGATCCTCTCAGACTACCCTTGCTTGGAGGTTG304940.11323696444576924No Hit
GCAGTCGGGCGCGTGATGGATTCCCCCGGA303040.11253141505098022No Hit
CGCTGGTTCAAGTTCAACTAGAATGTGGCT298160.11071926713173265No Hit
CTCCCAGAGAGGGTGATAGGCCCGTAGAGCGGC286410.1063560011376427No Hit
CTCCCAGAGAGGGTGATAGGCCCGTAGAGCGGCGCAC285620.10606264112612517No Hit
GGAGTTGAAATCTGGATAATTTTGCTGA282540.10491890842299349No Hit
GCATAAGGCTCAGTATAACAGCTATAATTTACAAGATC278670.10348181570834429No Hit
ATTTCGATCCTCTCAGACTACCCTTGCTTTTCGGTG274040.1017625032357795No Hit
TGCCCGGTTCCGTGTACTGGAGAGTTCGTTATC270210.10034026419259955No Hit
CGGCCGAGAATAATCTTGCA269430.10005061759894932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)