FastQCFastQC Report
Fri 23 Jun 2023
ERR2201447_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR2201447_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62327174
Total Bases1.8 Gbp
Sequences flagged as poor quality0
Sequence length1-49
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC10026791.6087348994838109No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT7643771.226394445543127No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT7188831.1534022062351168No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT3988230.6398862236237439No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC3584490.5751086997783663No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTG3496030.5609158534927318No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC3309250.5309481864202603No Hit
AACGATTAAAGTCCTACGTGATCTGAGTT2948450.4730601133945203No Hit
AACGATGCCGACTGGCGATGCGGCGGCG2683390.430532916509258No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT2486320.39891428416119107No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT2466290.39570059762375875No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA2464770.39545672325846193No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC2299540.3689466170887196No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG2201500.353216720527069No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA2017490.3236934823966189No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGA1970800.3162023678468079No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG1882310.3020047082513319No Hit
CAACGATTAAAGTCCTACGTGATCTGAGTT1669590.26787513260267504No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG1584920.2542903677936689No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA1574040.2525447407578595No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA1534990.24627941578098822No Hit
AGCTTGGTGATAGCTGGTTGCCCAAAAAAG1505030.24147252368605707No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC1493930.2396915990447441No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC1477720.23709080729378168No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1477720.23709080729378168No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1440820.23117043618887645No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1421880.22813163324234786No Hit
TAAGTCAGAATCCCGCCCAGGCGGAACGATAC1419750.22778988824360943No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA1403560.22519230536587462No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG1348520.21636148624354443No Hit
CGCTCGCCGAATCCCGGGGCCGAGGGAGC1309130.21004161042180414No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTG1291300.20718089993940683No Hit
CCGCCTGGATACCGCAGCTAGGAATAA1263660.2027462371388762No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT1260690.20226971946457895No Hit
TAGGTCAAGGTGTAGCCAATGAAGCGGA1258730.20195524988827507No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG1246050.1999208242619824No Hit
TAGCTCTTTCTCGATTCCGTGGGTGGTGGT1209880.19411757702988428No Hit
TCAAAATGTAAACTTAAAATATAGCCAAAAGAG1169370.1876180043073989No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC1157500.18571353804682367No Hit
CGCCGCGGCGCGGGAAATGTGGCGTACGGAAG1148970.18434495361525616No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATT1104400.17719397962756983No Hit
CTAAGTCAGAATCCCGCCCAGGCGGAACGATAC1095130.17570666688658143No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC1076270.17268069943296324No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA1058420.16981678007733833No Hit
CGGCGACGACCCATTCGAACGTCTGCCCT1049900.1684498000823846No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGC1049690.1684161069134949No Hit
AGGTCGGTTTCTATCTATTTACAATTTCTC1039920.16684857234181674No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC1026430.1646841873498067No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1016060.1630203865813008No Hit
GACCGCCTGGGAATACCGGGTGCTGTAGGCTT1005510.1613277059537466No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG992860.15929809363729536No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGCT992560.1592499605388815No Hit
AAAGGACTTGGCGGTACTTTATATCCATCTAGA986890.15834024497885946No Hit
AGGTCGGTTTCTATCTATTTACAATTTCTCC950150.15244554485977496No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCC947190.1519706316220915No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGAT942890.15128072387815947No Hit
ATGAGAGGTGTAGAATAAGTGGGAGGCCC924650.14835423149459656No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA920890.1477509633278095No Hit
CAAAATGTAAACTTAAAATATAGCCAAAAGAG908560.14577269298299966No Hit
CGCTCGCCGAATCCCGGGGCCGAGGGAGCCGGA903470.14495603474657778No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGAC878950.14102195616955132No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGC866180.13897309061373456No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGA851530.1366225909745242No Hit
CGCCGCGGCGCGGGAAATGTGGCGTACGGAA839820.13474379569976974No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG805750.12927748015656862No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG803920.12898386825624406No Hit
CGCGGCGCGGGAAATGTGGCGTACGGAAG781920.12545410770589407No Hit
GCGACCTCAGATCAGACGTGGCGACCCGC772770.12398604820427121No Hit
CGCGGCGCGGGAAATGTGGCGTACGGAA757370.12151521581902623No Hit
CGACTGCATAATTTGTGGTAGTGGGGG753290.12086060568059769No Hit
GTTAGGTCAAGGTGTAGCCAATGAAGCGGA751030.1204980030058799No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAAT743890.11935243526362996No Hit
CGCTCGCCGAATCCCGGGGCCGAGGGAG686970.11021998205790623No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC678490.10885941980940769No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA671640.1077603807289578No Hit
CGCTCGCCGAATCCCGGGGCCGAGGGAGCCGG666180.10688435833782549No Hit
CAACCCGCAGTTTTATCCGGTAAAGCGAATG655050.10509862038667116No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTA640460.10275774736714359No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT627400.10066235314952672No Hit
AACGATTAAAGTCCTACGTGATCTGAGTTC626370.1004970961783058No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC626090.10045217195311952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)