FastQCFastQC Report
Thu 22 Jun 2023
ERR2201448_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR2201448_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29880691
Total Bases918.9 Mbp
Sequences flagged as poor quality0
Sequence length1-49
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC3074611.028962148164512No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2319780.7763475081617088No Hit
GTTGAACCCCATTCGTGATGGGGATCGGGGATT2279730.7629442036665083No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTG2017310.6751216027768567No Hit
AAACGATGCCGACTGGCGATGCGGCGGCG1642300.5496191503737313No Hit
AACGATTAAAGTCCTACGTGATCTGAGTT1254740.41991666123116095No Hit
AACGATGCCGACTGGCGATGCGGCGGCG1208960.4045957303999429No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCG1118940.3744692517318291No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT1088070.3641381653456408No Hit
CAACGATTAAAGTCCTACGTGATCTGAGTT1002510.3355042893753695No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG958480.32076902103769955No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG943790.3158528027347159No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAAT943280.31568212395088185No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGAA857590.28700474162394707No Hit
AGGTCGGTTTCTATCTATTTACAATTTCTCC815680.27297896156417534No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTG809910.2710479486568768No Hit
TAAGTCAGAATCCCGCCCAGGCGGAACGATAC792330.2651645505788337No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAC766490.25651682553124355No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCC765640.25623236089152024No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAA712960.23860224651431253No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCC697880.23355550914133813No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCC679750.2274880457081799No Hit
AGGTCGGTTTCTATCTATTTACAATTTCTC666380.2230135842574725No Hit
CTAAGTCAGAATCCCGCCCAGGCGGAACGATAC658190.22027268378766743No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGCC645910.21616300640436995No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACA629410.21064104575091655No Hit
TAGCTCTTTCTCGATTCCGTGGGTGGTGGT627690.21006542318582924No Hit
CGCCGCGGCGCGGGAAATGTGGCGTACGGAAG621760.2080808639934063No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT621260.20791353185239259No Hit
AAAGGACTTGGCGGTACTTTATATCCATCTAGA607320.2032483117609295No Hit
TCAAAATGTAAACTTAAAATATAGCCAAAAGAG592070.1981446814600104No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGA591300.19788698996284926No Hit
GCCGCCTGGATACCGCAGCTAGGAATAA589370.19724108789853623No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATTTGA588850.1970670624718819No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT575780.19269300030578276No Hit
AGCTTGGTGATAGCTGGTTGCCCAAAAAAG563020.1884226840671121No Hit
CCGCCTGGATACCGCAGCTAGGAATAA557850.18669246972903003No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAA548400.18352989226387034No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCT545460.18254597927470953No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT529450.17718800411944957No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCATTC510670.1709030089029735No Hit
TTGAAAGTCAGCCCTCGACACAAGGGTTTGT509720.1705850778350474No Hit
CGCCGCGGCGCGGGAAATGTGGCGTACGGAA501210.16773708479499355No Hit
CGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCGCTC498400.1667966781624963No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC491520.16449418790214723No Hit
TGCGCCGCGACCGGCTCCGGGACGGCTGGG488790.16358055441221223No Hit
TAAACGATGCCGACTGGCGATGCGGCGGCG482120.16134834365108894No Hit
GCGACCTCAGATCAGACGTGGCGACCCGCTGA477020.15964155581274878No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGCG468030.15663292391732173No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC459100.15364437187881633No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCA459090.15364102523599604No Hit
CGGTGCGCCGCGACCGGCTCCGGGACGGCTGGG459050.15362763866471493No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTA450490.15076291241055972No Hit
CAAAATGTAAACTTAAAATATAGCCAAAAGAG440440.14739953637618353No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAA439790.14718200459286568No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCT426060.14258706400062837No Hit
AACGATTAAAGTCCTACGTGATCTGAGTTC425410.1423695322173105No Hit
CACAAAGCATCTGGCCTACACCCAGAAGAA421620.14110115458842637No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGC415240.13896599646909102No Hit
GGTGCGCCGCGACCGGCTCCGGGACGGCTGGG410320.13731944820151581No Hit
ACCAGGAGTGGAGCCTGCGGCTTAATT410090.1372424754166495No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGAC407930.13651960056747015No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT396530.13270442775235686No Hit
CGGGACCGGGGTCCGGTGCGGAGAGCCATT392360.13130887769630228No Hit
AGGGCTTCTGTCGTGAGTGGCACACGCAGG390700.13075333498813665No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCCCT380090.12720254695582509No Hit
CAACCCGCAGTTTTATCCGGTAAAGCGAATG370730.12407008927604786No Hit
CGCTCGCCGAATCCCGGGGCCGAGGGAGCCGGA369340.12360490592402966No Hit
TGCCCTCAGCCGATCGAAAGGGAGTCGGGTT368740.12340410735481318No Hit
GTGCGCCGCGACCGGCTCCGGGACGGCTGGG366210.12255740672128365No Hit
AAACGATGCCGACTGGCGATGCGGCGGC363140.1215299873754593No Hit
CGCGGCGCGGGAAATGTGGCGTACGGAAG361520.12098783123857476No Hit
TGAAAGTCAGCCCTCGACACAAGGGTTTGT360960.12080041924063939No Hit
TAAGTCAGAATCCCGCCCAGGCGGAACGATA359720.1203854355309253No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC356720.11938144268484287No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGC356480.11930112325715626No Hit
TGGATAACTGTGGTAATTCTAGAGCTAATACA353790.11840087633850234No Hit
TGCCCTCAGCCGATCGAAAGGGAGTCGGGT352360.11792230641520306No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACAC350860.11742030999216183No Hit
AAGCCGCCGTGGCGCAATGAAGGTGAAGGGC349100.11683130085579346No Hit
GTTAGGTCAAGGTGTAGCCAATGAAGCGGA347630.11633934436121307No Hit
AAGGGAGTCGGGTTCAGATCCCCGAATCCGGAG345360.11557965644101069No Hit
GCACGAGCGTACGCGTTAGGACCCGAAAGATGG338840.11339764532219151No Hit
TGCCCTCAGCCGATCGAAAGGGAGTCGGGTTC336800.11271493018685545No Hit
ATAAGCTTGCGTTGATTAAGTCCCTGCCCT334370.11190169598152867No Hit
CGCTCGCCGAATCCCGGGGCCGAGGGAGC330240.11051953249675518No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTGA329730.11034885371292116No Hit
ATAAACGATGCCGACTGGCGATGCGGCGGCG324380.10855839980407414No Hit
ACAAAGCATCTGGCCTACACCCAGAAGAA319570.10694866460752198No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT317870.10637973532807525No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC316420.10589447211913541No Hit
CTAAGTCAGAATCCCGCCCAGGCGGAACGATA313850.10503438491432478No Hit
ACAACCCGCAGTTTTATCCGGTAAAGCGAATG309240.10349158257417809No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCC305760.10232695087272245No Hit
AGGGCACCACCAGGAGTGGAGCCTGCGGCTTA301280.10082765488923934No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)