FastQCFastQC Report
Mon 26 Jun 2023
ERR3949769_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR3949769_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences121549761
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length15-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGATGATCCTATGCTGTCGAGAAAAGCC6096729550.15830101056308No Hit
GAAGTGGATGATCCTATGCTGTCGAGAAAAGCC41054083.377553329784005No Hit
GGATGATCCTATGCTGTCGAGAAAAGCC30478542.5074948522523215No Hit
TGGATGATCCTATGCTGTCGAGAAAAGC26096022.1469412844012092No Hit
AAGTGGATGATCCTATGCTGTCGAGAAAAGCC8227080.6768487187728819No Hit
TGCATGATCCTATGCTGTCGAGAAAAGCC8095160.6659955505794866No Hit
TCGATGATCCTATGCTGTCGAGAAAAGCC7689810.6326470687178068No Hit
TGGACGATCCTATGCTGTCGAGAAAAGCC5441580.44768331547768325No Hit
AGGATGATCCTATGCTGTCGAGAAAAGCC5215350.4290711850926634No Hit
TAGATGATCCTATGCTGTCGAGAAAAGCC5059560.41625421213292224No Hit
CGGATGATCCTATGCTGTCGAGAAAAGCC4760190.3916247930754878No Hit
TGGAAGATCCTATGCTGTCGAGAAAAGCC4509350.3709879775082404No Hit
TGAATGATCCTATGCTGTCGAGAAAAGCC4344040.35738778622526457No Hit
TGGCCGCAGAGACCAGCGAGAAGCGACTGTTTAC4106620.33785504522711485No Hit
TGGTTGATCCTATGCTGTCGAGAAAAGCC3843450.31620383029794685No Hit
TGGGTGATCCTATGCTGTCGAGAAAAGCC3753500.3088035689350307No Hit
TGGATGATCCTATGCTGTCGAGAAAGGCC3552500.29226713164824736No Hit
AGGCGTTCGGGTGAACTATGGTTAAGGA2941920.24203420687927144No Hit
TGGATGATCCTATGCTGTCGAGAAAAG2644630.21757591115296396No Hit
GAAGTGATCCTATGCTGTCGAGAAAAGCC2389890.1966182393398536No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCAATC2284400.18793948924342188No Hit
TGGATGATCCTATGCTGTCGAGAAGAGCC2234210.1838103161716624No Hit
GACGTGGATGATCCTATGCTGTCGAGAAAAGCC2151290.17698841875962223No Hit
TGGATGATCCTATGCCGTCGAGAAAAGCC2107720.17340387859750706No Hit
TGGATGACCCTATGCTGTCGAGAAAAGCC2086470.1716556234117153No Hit
TGGATGGATGATCCTATGCTGTCGAGAAAAGCC1998010.1643779455888852No Hit
TGGATGATCCTATGCTGCCGAGAAAAGCC1813620.149208026826149No Hit
TGGATGATCCTATGCTGTCGGGAAAAGCC1776230.14613192040747822No Hit
TGGATGGTCCTATGCTGTCGAGAAAAGCC1721240.1416078473408105No Hit
ACCCTGTGGGAGAGTAGGACGCCGCCGA1658370.13643548011583503No Hit
TGGATGATCCCATGCTGTCGAGAAAAGCC1613070.13270861141388834No Hit
GGGATGATCCTATGCTGTCGAGAAAAGCC1600620.13168433955209505No Hit
TGGATGATCCTATGCTGTCGAGGAAAGCC1521900.1252079796355996No Hit
GAGGCGTTCGGGTGAACTATGGTTAAGGA1477900.12158806301560725No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCAATC1470010.1209389461489768No Hit
TGGATGATCCTATGCTGTCGAGAA1469660.1209101513576814No Hit
GCAGTGGATGATCCTATGCTGTCGAGAAAAGCC1456970.1198661344961427No Hit
TGGATGATCCTATGCTGTTGAGAAAAGCC1430270.1176695032744655No Hit
TCCATGATCCTATGCTGTCGAGAAAAGCC1424090.11716106953102114No Hit
TGGATGATCCTACGCTGTCGAGAAAAGCC1423350.11710018911513943No Hit
GAAGTGGATGATCCTATGCTGTCGAGAAAAGC1336110.10992288170768183No Hit
GCCGTGGATGATCCTATGCTGTCGAGAAAAGCC1280390.10533875093345516No Hit
TAAGTGGATGATCCTATGCTGTCGAGAAAAGCC1239440.10196976035189408No Hit
GGATGATCCTATGCTGTCGAGAAAAGC1238260.10187268076981244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)