FastQCFastQC Report
Mon 26 Jun 2023
ERR3949770_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR3949770_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences120322929
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length15-51
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGATGATCCTATGCTGTCGAGAAAAGCC6002696849.88822039064558No Hit
TGGATGATCCTATGCTGTCGAGAAAAGC34396712.858699525175289No Hit
GAAGTGGATGATCCTATGCTGTCGAGAAAAGCC30676652.549526532885515No Hit
TGCATGATCCTATGCTGTCGAGAAAAGCC11135070.9254320928307854No Hit
TCGATGATCCTATGCTGTCGAGAAAAGCC9808490.8151804549239323No Hit
GGATGATCCTATGCTGTCGAGAAAAGCC7970150.6623966077155585No Hit
AAGTGGATGATCCTATGCTGTCGAGAAAAGCC7172740.5961241186208158No Hit
TGGACGATCCTATGCTGTCGAGAAAAGCC6712140.557843800494584No Hit
TGAATGATCCTATGCTGTCGAGAAAAGCC6680350.555201743800635No Hit
TGGAAGATCCTATGCTGTCGAGAAAAGCC5962520.495543122957055No Hit
TAGATGATCCTATGCTGTCGAGAAAAGCC5603080.46567017995381416No Hit
AGGCGTTCGGGTGAACTATGGTTAAGGA5275830.4384725375161038No Hit
TGGGTGATCCTATGCTGTCGAGAAAAGCC4346670.36125034821916613No Hit
TGGATGATCCTATGCTGTCGAGAAAGGCC4283730.3560194250257987No Hit
TGGTTGATCCTATGCTGTCGAGAAAAGCC4158890.3456440127051761No Hit
CGGATGATCCTATGCTGTCGAGAAAAGCC3906470.32466546754359676No Hit
AGGATGATCCTATGCTGTCGAGAAAAGCC3884620.32284952105845094No Hit
TGGATGATCCTATGCTGTCGAGAAAAG3819890.3174698315397558No Hit
GACGTGGATGATCCTATGCTGTCGAGAAAAGCC3597010.2989463462944789No Hit
TGGCCGCAGAGACCAGCGAGAAGCGACTGTTTAC3217630.2674161962928944No Hit
GAGGCGTTCGGGTGAACTATGGTTAAGGA2679890.22272479753214786No Hit
TGGATGATCCTATGCCGTCGAGAAAAGCC2496260.2074633671858171No Hit
TGGATGATCCTATGCTGTCGAGAAGAGCC2422110.20130078449137487No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCAATC2287980.19015328325326922No Hit
TGGATGACCCTATGCTGTCGAGAAAAGCC2257390.18761095817406506No Hit
TGGATGATCCCATGCTGTCGAGAAAAGCC2071370.17215089569503414No Hit
TGGATGGTCCTATGCTGTCGAGAAAAGCC2012570.16726404657253646No Hit
TGGATGATCCTATGCTGTCGGGAAAAGCC1962120.16307116326930504No Hit
GAAGTGATCCTATGCTGTCGAGAAAAGCC1898390.15777458342956394No Hit
GGGATGATCCTATGCTGTCGAGAAAAGCC1857570.15438204633465996No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCAATC1800900.1496722208283344No Hit
TGGATGATCCTATGCTGCCGAGAAAAGCC1726380.14347888755267918No Hit
TGGATGATCCTATGCTGTCGAGGAAAGCC1678170.1394721699303048No Hit
GCCGTGGATGATCCTATGCTGTCGAGAAAAGCC1647100.1368899522052027No Hit
TGGATGATCCTATGCTGTCGAGAA1637370.1360812950289799No Hit
TGGATGATCCTACGCTGTCGAGAAAAGCC1579410.1312642580368036No Hit
TGGATGATCCTATGCTGTCGAGAGAAGCC1518930.12623778465366314No Hit
TGGATGATCCTATGCAGTCGAGAAAAGCC1444340.12003863370048115No Hit
TGGATGATCCTATGCTGTTGAGAAAAGCC1432090.11902054013329412No Hit
GCAGTGGATGATCCTATGCTGTCGAGAAAAGCC1428400.1187138654179537No Hit
TGGATGATCCTATGTTGTCGAGAAAAGCC1417400.11779965894945923No Hit
TGGATGGATGATCCTATGCTGTCGAGAAAAGCC1368310.11371980480960532No Hit
TCCATGATCCTATGCTGTCGAGAAAAGCC1345340.11181077548403097No Hit
GGCTGATCCTATGCTGTCGAGAAAAGCC1322710.10993000344930101No Hit
TGGCCGCAGAGACCAGCGAGAAGCGACTGTTTACT1249270.10382642862691614No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)