FastQCFastQC Report
Fri 23 Jun 2023
ERR3949829_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR3949829_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21604717
Total Bases677.6 Mbp
Sequences flagged as poor quality0
Sequence length15-51
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAAGGGGTCACTGGTTCGAACCCAGTATCGCC391880.18138631484966916No Hit
AGCGGACGTGGCTCAGTTGGTAGAGCATCAC346890.16056215871746898No Hit
ACCGAAGGGGTCACTGGTTCGAACCCAGTATCGCC322130.14910169848556684No Hit
GGACGATTAGCTCAGCGGGAGAGCACTTCC292310.1352991571238818No Hit
ACCGAAGGGGTCACTGGTTCGATCCCAGTATCGCC256990.11895087540373707No Hit
CCGAAGGGGTCACTGGTTCGATCCCAGTATCGCC230500.10668966411362853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)