FastQCFastQC Report
Sat 30 Sept 2023
ERR4882113_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR4882113_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44323753
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1304210.29424629272706215No Hit
GTGGAATTAGTGTGTGTAAGTATGTATGTTGAGCTTGAACGCTTTCTTTA1055650.2381680089228906No Hit
GGCAGATGTAAAGTAGGCTCGGGTGTCTACATCTAGGCCTACTGTGAATA1006670.22711750063222308No Hit
GGGCAACCAGCTATCACCAAGCTCGATAGGCTTTTCACCTCTACCTAAAA844600.19055245615144548No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG768480.1733788201554142No Hit
GCTCGTTTGGTTTCGGGGTTCTTAGCTTAAATTCTTTTTGTTAAGGATTT631060.1423751278462363No Hit
GTTGGGTTAGTACCTATGATTCGATAATTGACAATGGTTATCCGGGTTGT546470.12329055258475066No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA530010.11957696813263985No Hit
GGAGAATTGGTTCTTGTTACTCATATTAACAGTATTTCATCTATGGGTCT502950.11347188944040908No Hit
GTGGGCTTTTGCTCATGTGTCATTTAGGGTATAGCCTGAGAATAGTGGGA484820.10938153183914728No Hit
GTACACTTCTGGGTGGCCGAAGAATCAGAATAGGTGTTGATAGAGAATTG476140.10742321391421887No Hit
CGAAGAATCAGAATAGGTGTTGATAGAGAATTGGGTCTCCACCTCCAGCG456560.1030057179499218No Hit
GTCTGATATTGGGTTATAGCAGGGGGTTTTATATTAATGATAGTGGTGAT456410.10297187605029746No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA448160.10111057157095879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)