FastQCFastQC Report
Sat 30 Sept 2023
ERR4882117_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR4882117_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43650891
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length35-76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAATTAGTGTGTGTAAGTATGTATGTTGAGCTTGAACGCTTTCTTTA1431550.32795435951124113No Hit
CCCGTGCGCTCGGCTTCGCTCCCCCCCACCCCGAGAAGGGGAGGGAGAGC1152830.2641022837311614No Hit
GGGCAACCAGCTATCACCAAGCTCGATAGGCTTTTCACCTCTACCTAAAA1111180.2545606686470615No Hit
CCGGGTTGTCATACACTTGTGCTAGGAGAATTGGTTCTTGTTACTCATAT897210.20554219614898583No Hit
CGGGTATCCGGCTCCCTCGGCCCCGGGATTCGGCGAGCGCTGCTGCCGGG895590.20517106970393803No Hit
CCGGCTCCCTCGGCCCCGGGATTCGGCGAGCGCTGCTGCCGGGGGGCTGT887030.20321005589553717No Hit
GCTCGTTTGGTTTCGGGGTTCTTAGCTTAAATTCTTTTTGTTAAGGATTT836500.19163411807561959No Hit
GTTGGGTTAGTACCTATGATTCGATAATTGACAATGGTTATCCGGGTTGT788450.1806263244431826No Hit
CTCGTTTGGTTTCGGGGTTCTTAGCTTAAATTCTTTTTGTTAAGGATTTT766640.17562986285892768No Hit
GCCCTCTTGAACTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTA661230.15148144398701965No Hit
GGAGAATTGGTTCTTGTTACTCATATTAACAGTATTTCATCTATGGGTCT601290.13774976552025023No Hit
GGAGGGGCGGCCCGGCCCCCGCGACCGCCCCCCTTTCCGCCACCCCACGG597020.13677154952003157No Hit
GGAGGGAGGAGGGGACCACGGCGACGACGCGGGGGACGGCGGGGCCCCGC574040.13150705216990874No Hit
CCGTGCGCTCGGCTTCGCTCCCCCCCACCCCGAGAAGGGGAGGGAGAGCG553330.12676259002364923No Hit
GGCAGATGTAAAGTAGGCTCGGGTGTCTACATCTAGGCCTACTGTGAATA551650.12637771815471074No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA550010.12600200990169938No Hit
GTTGTAGTTGTTTATTCACTATTTAAGGTTTTTTCCTTTTCCTAAAGAGC512560.11742257448994568No Hit
CGGGGAAGAAGGGAGGGAGGAGGGGACCACGGCGACGACGCGGGGGACGG512380.11738133821827372No Hit
CGGGGTTCTTAGCTTAAATTCTTTTTGTTAAGGATTTTCTAGTTAATTCA500640.1146918169436679No Hit
TGGGCAACCAGCTATCACCAAGCTCGATAGGCTTTTCACCTCTACCTAAA500370.11462996253615992No Hit
CGGCTCCCTCGGCCCCGGGATTCGGCGAGCGCTGCTGCCGGGGGGCTGTA484100.11090266175780926No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT470620.10781452319037427No Hit
CCGGGAGCGGCCGCGACGCCCGCCGCAGCTGGGGCGATCCACGGGAAGGG440510.10091661130124467No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)