FastQCFastQC Report
Tue 27 Jun 2023
ERR599190_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR599190_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences99829689
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAATCGTAT6334490.6345296738328013No Hit
TATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAAATCGTA4899940.49082993737464214No Hit
TATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAATCGTATG4262250.4269521464701749No Hit
TGGTGGGGCTGCATGGGACCTTCGTTGGTAGTAAAAAAAAAAAAAAAAAA3316680.3322338307595048No Hit
GTATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAATCGTA2533160.2537481610305327No Hit
GTATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAAATCGT2219370.22231562796915053No Hit
TATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAATCGTATGC2102240.2105826454092229No Hit
TTATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAATCGTA2082320.20858724702628295No Hit
GTATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAATCGTAT1887820.18910406502418334No Hit
TTATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAAATCGT1809590.1812677188646756No Hit
TTATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAATCGTAT1560540.15632023054784835No Hit
ATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAATCGTATG1514220.1516803282839036No Hit
TCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAATCGTATGC1489990.1492531946082693No Hit
TGGTGGGGCTGCATGGGACCTTCGTTGGTAAAAAAAAAAAAAAAAAAAAT1443050.14455118657136157No Hit
ATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAAATCGTAT1350180.13524834280511483No Hit
GGTGCGGCTGGATCACCTCCTTTCTAAAAAAAAAAAAAAAAAAAATCGTA1309230.1311463566715108No Hit
TCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAATCGTATGCC1212370.12144383220506678No Hit
TATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAAAATCGT1144640.11465927736186776No Hit
ATCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAATCGTATGC1134320.11362551675383863No Hit
TCCTGAGAGGTGATGCATAGCCGAAAAAAAAAAAAAAAAAAAATCGTATG1112770.11146684029036692No Hit
GGTGCGGCTGGATCACCTCCTTTCTAAAAAAAAAAAAAAAAAAATCGTAT1003450.10051619012856987No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)