FastQCFastQC Report
Sat 5 Aug 2023
ERR6109832_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR6109832_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68659465
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGTATGC5123430.746208843893555RNA PCR Primer, Index 17 (100% over 50bp)
CTGGAATTCTCGGGTGCCAAGGAACTCCAGTCACGTAGAGATCTCGTATG960770.13993263710982892RNA PCR Primer, Index 17 (100% over 49bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)