FastQCFastQC Report
Tue 27 Jun 2023
ERR618772_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR618772_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69520696
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAATCGT7423401.0677971348273039No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAATCG4365760.6279799039986597No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAATCGTA4177850.6009505428426666No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAATCGG1624440.23366279301921833No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAACG1573800.2263786311920698No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAATGG1571110.22599169605551703No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAACGG1503880.21632119448286308No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAATG1435180.20643924508465797No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAATCGAA1328630.19111287378365718No Hit
CGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCAAAAAAAAAAAAAAAA1249980.17979969590638162No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAATCGTAT1175440.16907770888829998No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAATCGA1152330.16575351892334336No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAAAG943030.13564737614249434No Hit
CCTGCGGTTGGATCACCTCCTTAAAAAAAAAAAAAAAAAAAATCGTATGC900270.12949668973394626No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAATC891870.12828841644508276No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAACCG844320.12144872657776613No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAACGT843780.1213710518663392No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAAAA811840.11677673652749392No Hit
ACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCAAAAAAAAAAAAAAA810100.11652645134622934No Hit
GGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAATCGTA804750.11575689633486984No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAAAT800980.11521461177546324No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAATCGTAG701780.10094547960221802No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)