FastQCFastQC Report
Mon 26 Jun 2023
ERR618775_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR618775_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48903913
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC36

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAATCGT4051300.8284204169919899No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAATCG2670770.5461260329004757No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAATCGTA2505990.5124313876478555No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAATGG1173400.2399399001057441No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAACGG959550.1962112929490939No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAACG955300.19534224183655816No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAATG929250.19001546972325098No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAATCGG869180.1777321990573638No Hit
CGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCAAAAAAAAAAAAAAAA844930.1727734956505423No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAATCGA836680.17108651407914946No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAATCGTAT773930.15825523000582795No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAATCGAA712750.14574498363760788No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAATC700060.1431500992568836No Hit
ACGGACGTGGGGGTTCAAGTCCCCCCCCTCGCACCAAAAAAAAAAAAAAA670230.13705038285995644No Hit
CCTGCGGTTGGATCACCTCCTTAAAAAAAAAAAAAAAAAAAATCGTATGC647360.13237386546144067No Hit
GGCACGCTGATATGTAGGTGAAGCGACAAAAAAAAAAAAAAAAAAAATCG637690.13039651857715354No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAAAG630080.1288404058791778No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAAAA579730.11854470622831347No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAAAAT535910.10958427805153342No Hit
GAGGCTGAGGCGTGATGACGAGGCACAAAAAAAAAAAAAAAAAAAAACGT493370.10088558762158767No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)