FastQCFastQC Report
Mon 25 Sept 2023
SRR014372.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR014372.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5222229
Total Bases182.7 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGTGCACAATCGACCGATCCTGAAAAAAAAAA1195932.2900757511782803No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAAAAAA969821.8570997173812178No Hit
AGAGGTGCACAATCGACCGATCCTAAAAAAAAAAA550261.0536879941496247No Hit
TTTTCTTTACTTATTCAATGAAGCGAAAAAAAAAA465590.8915541620254492No Hit
GTTTCTTTACTTATTCAATGAAGCGAAAAAAAAAA448470.8587712258501112No Hit
AAGAGGTGCACAATCGACCGATCCTAAAAAAAAAA415580.7957904565272799No Hit
GTTTCTTTACTTATTCAATGAAGCAAAAAAAAAAA372910.7140820519360602No Hit
GTTTCTTTACTTATTCAATGAAGCGGAAAAAAAAA356710.6830608156019202No Hit
AGTTTCTTTACTTATTCAATGAAGCGAAAAAAAAA350120.6704416830437732No Hit
AGTTTCTTTACTTATTCAATGAAGCAAAAAAAAAA345830.6622268000886212No Hit
AGAGGTGCACAATCGACCGATCCAAAAAAAAAAAA292520.5601439538557195No Hit
TTTTCTTTACTTATTCAATGAAGCGGAAAAAAAAA262670.5029844535733687No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAAAAAAAA260540.4989057354627689No Hit
TTTCTTTACTTATTCAATGAAGCGAAAAAAAAAAA245260.46964619896982684No Hit
AAGAGGTGCACAATCGACCGATCCAAAAAAAAAAA228080.4367483693265845No Hit
AAGAGGTGCACAATCGACCGATCCCGAAAAAAAAA214540.410820743402865No Hit
AGAGGTGCACAATCGACCGATCCCGAAAAAAAAAA201070.385027159858367No Hit
TTTTCTTTACTTATTCAATGAAGCAAAAAAAAAAA196970.3771761062182451No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGAAAAAA189970.3637718682960858No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGAAAAAAA175880.3367910522499109No Hit
TTTCTTTACTTATTCAATGAAGCGGAAAAAAAAAA141920.27176134941612096No Hit
TATAGATGGATACGAATAAGGCGTCAAAAAAAAAA129840.24862946454473753No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAAACA129530.24803584829389902No Hit
AGATGGATACGAATAAGGCGTCAAAAAAAAAAAAA127080.2433443650211433No Hit
AGTTTCTTTACTTATTAAATGAAGCGAAAAAAAAA124410.23823160569940538No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAACAAA122660.23488054621886556No Hit
AGAGGTGCACAATCGACCGATCCTGAAACAAAAAA122520.23461246146042236No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAACAAA119520.22886778806521121No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAACAA113360.21707205869371105No Hit
AAGAGGTGCACAATCGACCGATCCCAAAAAAAAAA112280.21500397627143508No Hit
TTTCTTTACTTATTCAATGAAGCAAAAAAAAAAAA110260.21113589618532622No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAAAACA106240.20343803383574333No Hit
AGAGGTGCACAATCGACCGATCCCAAAAAAAAAAA102330.19595080951065147No Hit
AAGAGGTGCACAATCGACCGATCCTGAACAAAAAA96290.18438486707495974No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAAACAA92080.1763231754103468No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAACAAAA88350.16918063148896764No Hit
AGAGGTGCACAATCGACCGATCCTGCAAAAAAAAA82340.15767213578722802No Hit
TCTTTACTTATTCAATGAAGCGAAAAAAAAAAAAA81720.15648490328555106No Hit
TGTTTCTTTACTTATTCAATGAAGCGAAAAAAAAA77640.14867214746806393No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAAAAC77060.14756151061165643No Hit
TCTTTACTTATTCAATGAAGCGGAAAAAAAAAAAA71520.13695301374183322No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAACAAAA70540.13507642043273094No Hit
GTTTCTTTACTTATTAAATGAAGCGGAAAAAAAAA68840.13182110550877796No Hit
AGAGGTGCACAATCGACCGATCCAGAAAAAAAAAA68070.13034663933734042No Hit
TGAGGTGCACAATCGACCGATCCTGAAAAAAAAAA67800.12982961873177143No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAAAAAC67020.12833600364901654No Hit
AGAGGTGCACAATCGACCGATCCTGAAAACAAAAA66510.12735940917183064No Hit
CTTTACTTATTCAATGAAGCGGAGAAAAAAAAAAA66460.1272636646152438No Hit
TGTTTCTTTACTTATTCAATGAAGCAAAAAAAAAA66150.12667004836440532No Hit
TTTTCTTTACTTATTCAATGAAGCGGAGAAAAAAA65350.1251381354590157No Hit
GTTTTCTTTACTTATTCAATGAAGCAAAAAAAAAA64190.12291686174620071No Hit
AAGAGGTGCACAATCGACCGATCCTGCAAAAAAAA63470.12153814013135004No Hit
AGAGGTGCACAATCGACCGATCCTGAACAAAAAAA62590.11985303593542146No Hit
AGAGGTGCACAATCGACCGATCCTAAAAAAAAACA60170.11521899939661781No Hit
TTCTTTACTTATTCAATGAAGCGAAAAAAAAAAAA59630.1141849581854798No Hit
AAGAGGTGCACAATCGACCGATCCTGACAAAAAAA59250.11345729955541972No Hit
TGTTTCTTTACTTATTCAATGAAGCGGAAAAAAAA59220.11339985282146763No Hit
AAGAGGTGCACAATCGACCGATCCTGAAACAAAAA58430.11188708882739534No Hit
AGAGGTGCACAATCGACCGATCCTGACAAAAAAAA58380.11179134427080849No Hit
AGAGGTGCACAATCGACCGATCCGAAAAAAAAAAA58380.11179134427080849No Hit
AAGAGGTGCACAATCGACCGATCCAGAAAAAAAAA56660.10849773152422079No Hit
AGTTTTCTTTACTTATTCAATGAAGCAAAAAAAAA56510.10821049785446023No Hit
AGAGGTGCACAATCGACCGATCCTAAAACAAAAAA54210.10380624825146503No Hit
ATATAGATGGATACGAATAAGGCGTCAAAAAAAAA54070.10353816349302186No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)