FastQCFastQC Report
Mon 25 Sept 2023
SRR014374.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR014374.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4601558
Total Bases165.6 Mbp
Sequences flagged as poor quality0
Sequence length36
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGTGCACAATCGACCGATCCTGAAAAAAAAAAA4092518.893748595584364No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAAAAAAA3993038.677560947835495No Hit
AAGAGGTGCACAATCGACCGATCCTAAAAAAAAAAA2471315.3705940466250786No Hit
AAGAGGTGCACAATCGACCGATCCCGAAAAAAAAAA1876244.0774016104980095No Hit
AGAGGTGCACAATCGACCGATCCTAAAAAAAAAAAA1822183.9599196619927426No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1740313.782001661176497No Hit
AGAGGTGCACAATCGACCGATCCCGAAAAAAAAAAA1576153.4252529252048984No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAAAAAAAAA688601.4964496807385672No Hit
AAGAGGTGCACAATCGACCGATCCGAAAAAAAAAAA529551.150805879226123No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGAAAAAAA521021.1322686794342265No Hit
AGATGGATACGAATAAGGCGTCAAAAAAAAAAAAAA520591.131334213325139No Hit
AGAGGTGCACAATCGACCGATCCGAAAAAAAAAAAA503231.0936078606419826No Hit
AAGAGGTGCACAATCGACCGATCCCAAAAAAAAAAA446260.9698019670728913No Hit
AAGAGGTGCACAATCGACCGATCCAAAAAAAAAAAA435740.9469401450552183No Hit
AAGAGGTGCACAATCGACCGATCCTCAAAAAAAAAA394590.857513911592552No Hit
AGAGGTGCACAATCGACCGATCCAAAAAAAAAAAAA353290.7677617015802038No Hit
CTTTACTTATTCAATGAAGCGGAGAAAAAAAAAAAA335750.7296441770374295No Hit
AAGAGGTGCACAATCGACCGATCCTGGAAAAAAAAA327500.7117154668049387No Hit
CTTTACTTATTCAATGAAGCGGAAAAAAAAAAAAAA326790.7101725111364455No Hit
AGAGGTGCACAATCGACCGATCCTCAAAAAAAAAAA286720.6230933088314872No Hit
AGAGGTGCACAATCGACCGATCCCAAAAAAAAAAAA284070.6173343897871112No Hit
AGAGGTGCACAATCGACCGATCCTGGAAAAAAAAAA278700.6056644293085082No Hit
AAGAGGTGCACAATCGACCGATCCAGAAAAAAAAAA233750.5079801232539066No Hit
CACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAAA219270.4765125203246378No Hit
AGAGGTGCACAATCGACCGATCCAGAAAAAAAAAAA216010.4694279633115567No Hit
ATATAGATGGATACGAATAAGGCGTCAAAAAAAAAA211190.4589532501817863No Hit
AGTTTCTTTACTTATTCAATGAAGCGAAAAAAAAAA175390.38115351365776545No Hit
AAGAGGTGCACAATCGACCGATCCTTAAAAAAAAAA160160.3480560279800885No Hit
AGATGGATACGAATAAGGCGTCCAAAAAAAAAAAAA136540.2967255872902178No Hit
AAGAGGTGCACAATCGACCGATCCGGAAAAAAAAAA135610.29470453268219154No Hit
AGAGGTGCACAATCGACCGATCCGGAAAAAAAAAAA125340.27238600491398784No Hit
AGAGGTGCACAATCGACCGATCCTTAAAAAAAAAAA122390.2659751327702487No Hit
ATAGATGGATACGAATAAGGCGTCAAAAAAAAAAAA120790.2624980495736444No Hit
AATATAGATGGATACGAATAAGGCGTCAAAAAAAAA114320.24843759439737587No Hit
AAATATAGATGGATACGAATAAGGCGTCAAAAAAAA113970.24767698244811867No Hit
ATATTAGCATGGAATAATAGAATAAAAAAAAAAAAA96520.20975504383515323No Hit
CTTTACTTATTCAATGAAGCGAAAAAAAAAAAAAAA90660.19702022662759006No Hit
ATATAGATGGATACGAATAAGGCGTCCAAAAAAAAA89780.1951078308694577No Hit
AAGAGGTGCACAATCGACCGATCCTGAGAAAAAAAA87720.19063108625382968No Hit
ATATATTAGCATGGAATAATAGAATAAAAAAAAAAA80870.17574482381836762No Hit
AGAGGTGCACAATCGACCGATCCTGAGAAAAAAAAA79940.17372376921034136No Hit
AGAGGTGCACAATCGACCGATCCTGCAAAAAAAAAA70630.1534914913601002No Hit
AAGAGGTGCACAATCGACCGATCCTGCAAAAAAAAA69870.15183987684171318No Hit
AGATGGATACGAATAAGGCGCCAAAAAAAAAAAAAA66260.14399470787937477No Hit
AATATATTAGCATGGAATAATAGAATAAAAAAAAAA59620.129564812613467No Hit
AAGAGGTGCACAATCGACCGATCCTGACAAAAAAAA58090.12623985180671415No Hit
AAATATAGATGGATACGAATAAGGCGTCCAAAAAAA54840.11917702656361173No Hit
AAGAGGTGCACAATCGACCGATCCTGTAAAAAAAAA54380.11817736514458797No Hit
AATATAGATGGATACGAATAAGGCGTCCAAAAAAAA53960.11726463080547936No Hit
AGAGGTGCACAATCGACCGATCCTGAACAAAAAAAA52790.11472201371796249No Hit
AAGAGGTGCACAATCGACCGATCCTGAACAAAAAAA52140.113309448669342No Hit
AAGAGGTGCACAATCGACCGATCCCGACAAAAAAAA49540.10765918847486003No Hit
AGAGGTGCACAATCGACCGATCCTGTAAAAAAAAAA48860.10618142811630323No Hit
AGAGGTGCACAATCGACCGATCCTGAAACAAAAAAA48020.10435595943808597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)