FastQCFastQC Report
Mon 25 Sept 2023
SRR014380.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR014380.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5322596
Total Bases186.2 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGTGCACAATCGACCGATCCTGAAAAAAAAAA913701.7166435325919909No Hit
TTTTCTTTACTTATTCAATGAAGCAAAAAAAAAAA840641.5793796861531477No Hit
TTTTCTTTACTTATTCAATGAAGCGAAAAAAAAAA728671.3690124142429747No Hit
GTTTCTTTACTTATTCAATGAAGCAAAAAAAAAAA549201.0318273263648041No Hit
AGAGGTGCACAATCGACCGATCCTAAAAAAAAAAA419070.7873413650030924No Hit
GTTTCTTTACTTATTCAATGAAGCGAAAAAAAAAA415280.7802207794842968No Hit
TTTCTTTACTTATTCAATGAAGCGAAAAAAAAAAA396690.7452942135754809No Hit
AAGAGGTGCACAATCGACCGATCCTGAAAAAAAAA333240.6260854665655631No Hit
TTTCTTTACTTATTCAATGAAGCAAAAAAAAAAAA286850.53892874830252No Hit
AGAGGTGCACAATCGACCGATCCCGAAAAAAAAAA271520.5101270132093437No Hit
AGTTTCTTTACTTATTCAATGAAGCAAAAAAAAAA252870.4750877203530007No Hit
AGAGGTGCACAATCGACCGATCCAAAAAAAAAAAA251860.4731901500696277No Hit
TTTTCTTTACTTATTCAATGAAGCGGAAAAAAAAA247630.4652429002689665No Hit
AGATGGATACGAATAAGGCGTCAAAAAAAAAAAAA234830.44119448479651663No Hit
AGTTTCTTTACTTATTCAATGAAGCGAAAAAAAAA228850.42995936569298143No Hit
GTTTCTTTACTTATTCAATGAAGCGGAAAAAAAAA185170.3478941478932461No Hit
AAGAGGTGCACAATCGACCGATCCTAAAAAAAAAA160240.30105610119573234No Hit
TTTCTTTACTTATTCAATGAAGCGGAAAAAAAAAA139010.2611695495957236No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAAAAAAAA127360.2392817339508766No Hit
GTTTCTTTACTTATTCAATGAAGCGGAGAAAAAAA123570.2321611484320809No Hit
TTCTTTACTTATTCAATGAAGCGAAAAAAAAAAAA120640.2266563158278404No Hit
AAGAGGTGCACAATCGACCGATCCCGAAAAAAAAA120490.22637449845902263No Hit
TTCTTTACTTATTCAATGAAGCAAAAAAAAAAAAA119790.225059350737873No Hit
AGAGGTGCACAATCGACCGATCCCAAAAAAAAAAA113410.21307271865082378No Hit
TCTTTACTTATTCAATGAAGCGGAAAAAAAAAAAA111960.2103484840855853No Hit
TTTTCTTTACTTATTCAATGAAGCGTAAAAAAAAA111330.20916485113655064No Hit
TTTTCTTTACTTATTCAATGAAGCGGAGAAAAAAA106580.2002406344573212No Hit
AGAGGTGCACAATCGACCGATCCGAAAAAAAAAAA104330.1960133739250546No Hit
AGAGGTGCACAATCGACCGATCCAGAAAAAAAAAA102760.19306368546476194No Hit
TCTTTACTTATTCAATGAAGCGGAGAAAAAAAAAA100000.18787824587851493No Hit
AGTTTCTTTACTTATTCAATGAAGCGGAGAAAAAA99910.18770915545722425No Hit
AAGAGGTGCACAATCGACCGATCCAAAAAAAAAAA97070.18237341327427442No Hit
AGAGGTGCACAATCGACCGATCCTGAAACAAAAAA95190.17884130225175834No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAAACA95040.17855948488294057No Hit
TTTTTCTTTACTTATTCAATGAAGCAAAAAAAAAA89780.1686770891497307No Hit
GTTTCTTTACTTATTCAATGAAGCGTAAAAAAAAA81250.15265107477629336No Hit
TCTTTACTTATTCAATGAAGCGAAAAAAAAAAAAA79080.1485741168407296No Hit
AGAGGTGCACAATCGACCGATCCGGAAAAAAAAAA78650.14776624038345199No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAAACAA72990.13713233166672803No Hit
AGAGGTGCACAATCGACCGATCCTGGAAAAAAAAA72610.13641839433238967No Hit
TTTTCTTTACTTATTCAATGAAGCAAAACAAAAAA66220.12441297442075258No Hit
AGAGGTGCACAATCGACCGATCCTGAAAACAAAAA64920.1219705572243319No Hit
TATAGATGGATACGAATAAGGCGTCAAAAAAAAAA64470.12112510511787856No Hit
TGTTTCTTTACTTATTCAATGAAGCAAAAAAAAAA61770.11605239247915868No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAACAAAA61330.11522572819729321No Hit
TTTTCTTTACTTATTCAATGAAGCAAAAAAAAACA60780.11419239784496137No Hit
TTTCTTTACTTATTCAATGAAGCGGAGAAAAAAAA60330.11334694573850805No Hit
ATATTAGCATGGAATAATAGAATAAAAAAAAAAAA59330.1114681632797229No Hit
AGAGGTGCACAATCGACCGATCCTGCAAAAAAAAA59280.11137422415678365No Hit
TTTTCTTTACTTATTCAATGAAGCGAAAAAAAACA58120.10919483650459287No Hit
TTTTCTTTACTTATTCAATGAAGCGAAACAAAAAA57950.1088754434865994No Hit
GTTTTCTTTACTTATTCAATGAAGCAAAAAAAAAA57620.10825544527520028No Hit
AGAGGTGCACAATCGACCGATCCTGAAAAAACAAA57270.1075978714146255No Hit
TTTTCTTTACTTATTCAATGAAGCGCAAAAAAAAA56680.10648938976394226No Hit
ACTTATTCAATGAAGCGGAGAAAAAAAAAAAAAAA55900.10502393944608983No Hit
TTTCTTTACTTATTCAATGAAGCGTAAAAAAAAAA55420.10412212386587297No Hit
AGATGGATACGAATAAGGCGCCAAAAAAAAAAAAA53530.10057122501876904No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)