FastQCFastQC Report
Mon 25 Sept 2023
SRR057511.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR057511.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4807481
Total Bases173 Mbp
Sequences flagged as poor quality0
Sequence length36
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACTC59997712.480070124042092No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACT51055510.620010770713396No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCACTCG1282992.6687364963064857No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCATC1159492.4118452054204687No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCATCG811061.6870789504940322No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCTC513841.0688341773997652No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCATCGT475870.9898531060237159No Hit
CTAAACCATTCGTAGACGACCTGCTTTCGTATGCCG345660.7190044016814627No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAT281320.5851713194498325No Hit
TTTGGTGACTCTAGATAACCTCGGGCTGATCGCACT226850.47186873957484177No Hit
TTGGTGACTCTAGATAACCTCGGGCTGATCGCACTC201780.41972084757069245No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCTCGTAT137530.2860749735672382No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATTC118640.2467820465645106No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATTCG107800.22423385552641809No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCTCGTATG107190.22296499975766934No Hit
CATTGATCATCGACACTTCGAACGCATCGTATGCCG96520.20077042426168715No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC94350.19625662587122028No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATATC91370.19005795342716902No Hit
CCCTGGTGGTCTAGTGGTTAGGATTCGGTCGTATGC91110.18951712965688267No Hit
TACTTGGATAACTGTGGTAATTCTAGAGTCGTATGC91080.18945472691415732No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCTCG87310.18161278224500524No Hit
CTGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTTCG86830.18061433836139965No Hit
ATTGATCATCGACACTTCGAACGCATCGTATGCCGT86700.1803439264762565No Hit
TACTTGGATAACTGTGGTAATTCTAGTCGTATGCCG85930.1787422560796392No Hit
TTTTTTTACTCTATATAACCTCTTTCCTATCTCACT80480.1674057578178676No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCTCACTC75630.15731731441060298No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGTCGTATG72660.1511394428807935No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGTCGTATGCC70920.1475200838027233No Hit
AGCGTGTACTCCGAAGAGGATCCAAATCGTATGCCG70850.1473744774030308No Hit
GGTGACTCTAGATAACCTCGGGCCGATCGCACTCGT64030.13318825389013497No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCTCGT60460.12576232750581853No Hit
TTGGTGACTCTATATAACCTCGGGCCGATCGCACTC58990.12270459311227648No Hit
TTTTTTACTCTATATAACCTCTTTCCTATCTCACTC56780.11810759106484249No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCTCACT56700.11794118375090823No Hit
CGCCTGGATACCGCAGCTAGGAATAATGGAATTCGT52920.11007843816751434No Hit
CTGGATACCGCAGCTAGGAATAATGGAATTCGTATG52790.10980802628237116No Hit
CTGGTGACTCTAGATAACCTCGGGCCGATCGCACTC52190.1085599714278642No Hit
CCATCTGTGGGATTATGACTGAACTCGTATGCCGTC51230.10656308366065305No Hit
CTAAACCATTCGTAGACGACCTGCTTCTCGTATGCC51130.10635507451823521No Hit
TGGTGACTCTAGATAACCTCGGGCCGATCGCTCGTA48420.1007180267587121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)