FastQCFastQC Report
Fri 29 Sept 2023
SRR10240641_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10240641_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38117566
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length16-69
%GC66

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGGTTGGCCTCGGATAGCCGGTCCCC16138804.2339534481294No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC13932393.6551100875643527No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG13707003.595979869228796No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCC13128513.4442151946428057No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG10642922.7921300116591916No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC8653032.2700898583083715No Hit
TGTGCATTTATCAGATCAAAACCAACCCGG7023431.842570430651317No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG5698831.4950666052496637No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC5356401.405231383346985No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC4992751.3098291742972257No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA4938221.2955234339989075No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC4771831.251871643640625No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG4001241.0497102569455772No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC3698370.9702534521747794No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG3563070.9347580063218097No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC3527970.9255496534065161No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG3297020.8649607899937788No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC3020690.7924666543503853No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCC2938340.770862441741427No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC2769220.7264944461563995No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG2525850.6626472424813273No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG2522490.6617657591253334No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCCCG2228650.5846779408737692No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCC2183490.5728303848152319No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG2154610.5652538254934746No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA1894830.4971015200708251No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1851010.4856055079697376No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCCCG1745170.45783878225592894No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCC1606660.42150120498250077No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCC1533440.40229221351646643No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCC1458590.38265559768428026No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC1350060.35418316059320265No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCC1343160.3523729715585722No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC1163270.3051795070020998No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1103920.28960925784190944No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1080030.2833418062422979No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1078690.2829902622848479No Hit
CCCTCGGTTGGCCTCGGATAGCCGGTCCCC993760.26070919638468No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCC993710.2606960790728348No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG990780.25992740459870917No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC983310.2579676782090441No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG977370.25640934156184053No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA975550.2559318714106772No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC952620.2499162721984924No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT926130.24296672038293313No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCC903170.23694325078364134No Hit
TCGACTGCATAATTTGTGGTAGTGGGG890940.2337347563063182No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG851560.22340356149707982No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT839680.22028688820267275No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATC831510.2181435194471756No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCCG775000.20331833359978965No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC733670.19247556362859056No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC720730.18908080332306634No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC717430.18821506074128658No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC707820.1856939134046492No Hit
ATCGTTTTTTCACTGACCCGGTGAGGCGGGG676220.1774037723185158No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC650930.1707690359872401No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA636720.16704109596084912No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGG631660.16571362400212017No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCC625150.16400574999988193No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA612810.16076839743649948No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCC607650.15941469085408022No Hit
TCGGGGGGGATGCGTGCATTTATCAGA584210.15326529506107497No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTT581410.15253072559774672No Hit
ATGTACACGGAGTCGACCCGCAACGCGA570280.14961081198101683No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT559720.14684043571932165No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCC550510.1444242268774454No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCC543240.14251696973516095No Hit
CGTGCATTTATCAGATCAAAACCAACCCGG533180.13987776659191722No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA513080.13460460723016784No Hit
GTGCATTTATCAGATCAAAACCAACCCGG497320.13047003053657727No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTAT472890.1240609119690381No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG459710.12060318856665718No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCC459010.1204195462008251No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCC455090.11939114895216552No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG438020.11491289868823208No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC436460.11450363855866348No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC427540.11216351012548914No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC419380.11002276483236101No Hit
TGCGTGCATTTATCAGATCAAAACCAACC416820.10935115846588946No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC416040.10914652840110514No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTG415750.10907044799240329No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCCCG414470.10873464480916752No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCCC409460.10742029016228372No Hit
TCGGGCCGCCGGTGAAATACCACTACTCT409270.10737044437727214No Hit
AGTGAGGCCCTCGGATCGGCCCCGCCGGGG405310.10633155327913645No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC405170.10629482480597004No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCC404280.10606133665512642No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC395430.10373957245853527No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC391210.10263247133880479No Hit
TTGCGTGCATTTATCAGATCAAAACCAACC389710.10223895198345036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)