FastQCFastQC Report
Fri 29 Sept 2023
SRR10240642_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10240642_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42310172
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length16-69
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGTTTTTTCACTGACCCGGTGAGGCGGGG25240895.965678891591365No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC19398294.584781645416142No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCC18925064.472933837281493No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCC11025172.6057965446228866No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG9353702.210744971681987No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA6451301.524763359506078No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG5999041.4178718063353655No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG5893121.3928376372471376No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC5594881.322348677760043No Hit
TGTGCATTTATCAGATCAAAACCAACCCGG5008241.1836964406573436No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC4621151.0922078028895748No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC4114210.9723926435468048No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC3673480.8682262033820141No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCCCG3563450.842220636682829No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCC3503600.828075102129105No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC3195670.7552959132380743No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC2802960.6624789896859791No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG2655520.6276315775790275No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC2502750.5915244211250192No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG2492130.5890143864222532No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG2487790.5879886283610475No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT2464180.582408409968175No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG2428710.5740250831407634No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCC2290440.5413449985502304No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA2226080.5261335264720739No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1912890.4521111377188445No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC1755370.4148813197923185No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1735480.41018032259476517No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCCCG1721490.4068737891209707No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCC1496880.35378726420682005No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1439510.3402278771166423No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1417780.3350919963171031No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1399820.3308471542020675No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCC1350490.3191880193727409No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCC1196810.2828657846155766No Hit
ATCGTTTTTTCACTGACCCGGTGAGGCGGGG1192390.28182111857167585No Hit
AGTGAGGCCCTCGGATCGGCCCCGCCGGGG1073220.25365531484958276No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCC1072740.2535418669534125No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1055990.24958300807663936No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATC1042890.24648682591032722No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC990630.23413518621479487No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT945840.22354907940341154No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCCG921150.21771360324415603No Hit
TCGACTGCATAATTTGTGGTAGTGGGG881970.2084534187192621No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC864330.20428420853500665No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGG825280.19505474948199217No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC802180.1895950694788005No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC801710.18948398508046715No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCC797860.18857403841326856No Hit
CCCTCGGTTGGCCTCGGATAGCCGGTCCCC783010.1850642441255025No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA771310.18229895165635346No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA743530.17573315466550218No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC738910.17464121866486385No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC725510.17147413156344532No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCC691540.16344532941156562No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT685020.16190432882192016No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG677230.16006316400699105No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCC674310.15937302263862224No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTT668850.158082552819686No Hit
CGCTGAGAAGACGGTCGAACTTGACTATC663650.15685353394450866No Hit
TCGGGGGGGATGCGTGCATTTATCAGA652780.15428441179582064No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC647510.15303884843578514No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC622450.14711592285656508No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA618140.14609725528887002No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT599240.14163024437716773No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCC594320.14046740344142303No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG593270.14021923616855067No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC572660.13534806712674202No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG559940.13234169787823125No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC542860.12830484357284105No Hit
CCCCCCGCGGGGGCGCGCCGGC525500.12420181132801825No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCC519870.12287116204585508No Hit
GTGCATTTATCAGATCAAAACCAACCCGG518940.12265135674702526No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC517130.12222356363855008No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA488910.11555377274287612No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT469590.11098749492202489No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC466060.11015318018560644No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTG457780.1081962039766702No Hit
TCCCCGCCACGCAGTTTTATCCGGTAAAGC455250.10759823902393968No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC444550.1050692963384786No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG443440.10480694807858497No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCC442730.10463913973216654No Hit
CCCGGGGCTACGCCTGTCTGAGCGTCGCT427590.10106080400713097No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)