FastQCFastQC Report
Fri 29 Sept 2023
SRR10240643_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10240643_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34963413
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length16-69
%GC68

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGTTTTTTCACTGACCCGGTGAGGCGGGG17080234.885172394354064No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCC13987764.000684944573346No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC12971603.710049702527611No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG9939102.842714468407303No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCC8415662.4069904159528135No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCC8269792.36526966060207No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG7655312.189520227902236No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC5806551.6607503392188856No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG5737631.6410383048130912No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA5354191.5313693774689559No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC5065941.448926053071535No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG4046871.1574585124169656No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC3524671.008102384055012No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC3495440.9997422162418754No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCC3489430.9980232765033551No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG3463270.9905411694218753No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG3337770.9546465043329723No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG3296560.9428598975735006No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCC3140900.8983390723325552No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC3140250.8981531637085887No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC3111590.8899560234580073No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG2937670.8402125959499435No Hit
TGTGCATTTATCAGATCAAAACCAACCCGG2395500.6851447826332058No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC2104630.6019521034745664No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA2064970.5906088172799377No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC2041220.583816002173472No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA2016970.5768801804331859No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCC2016820.5768372784430399No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCC1805060.5162711088874533No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1767260.5054598073706362No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC1649630.4718160666980652No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT1598670.4572408305790971No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1590970.455038528418264No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG1517320.43397365125652926No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCC1510810.4321117048841885No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG1353240.3870445943020494No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCCCG1332130.381006854222155No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1297280.37103929184487794No Hit
TCGGGGGGGATGCGTGCATTTATCAGA1295230.37045296464621463No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCC1160430.33189837616825335No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCC1137360.32530005008378327No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC1025950.29343531193593714No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC1014100.2900460547143953No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC959490.27442687016853873No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG886500.2535507617634469No Hit
TCGACTGCATAATTTGTGGTAGTGGGG870780.2490546331961356No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCC853890.24422386910568486No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCC829290.23718794272172455No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC820400.2346452847723991No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC801100.22912522870693428No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC799280.22860468455982833No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC793240.2268771644232787No Hit
CCCCCCGCGGGGGCGCGCCGGC782910.22392264736855066No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCC778650.22270423084840146No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCCCG757290.21659498745159692No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTT714960.2044880458323677No Hit
AGTGAGGCCCTCGGATCGGCCCCGCCGGGG708190.20255173601044038No Hit
ACGATGCCGACCGGCGATGCGGCGGCGTTAT673360.19258989389851613No Hit
CCCTCGGTTGGCCTCGGATAGCCGGTCCCC631500.18061737851507803No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG621820.17784877008431643No Hit
TCACCTCTAGCATCACCAGTATTAGAGGC561140.16049348500388105No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCC546800.15639205474591394No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC545400.15599163617121703No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCCC531240.15194168830142527No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATC520250.14879840249005438No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCC516180.1476343284907569No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC507690.14520607584848766No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGC503100.14389327495001705No Hit
TCGGTTGGCCTCGGATAGCCGGTCCC502950.14385037295987094No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT489660.14004925663292653No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC487490.1394286078421463No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTC486040.13901388860406735No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCC462180.13218961203816115No Hit
TCCCCGCGGGGGCGCGCCGGC453430.12968699594630534No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC444720.12719582038515517No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCG441510.12627771779602864No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC426840.12208190315974016No Hit
CGGTTGGCCTCGGATAGCCGGTCCCC421340.12050883018771652No Hit
TTGGCAATTTTTGACAGTCTCTACGGAGACTG412360.11794043104430336No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCC406920.11638451886833816No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCC389110.11129062257165799No Hit
TCGGGCCGCCGGTGAAATACCACTACTCT379570.10856205599836606No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC376270.10761821221515187No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCT373880.1069346405054907No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC354600.10142030470537873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)