FastQCFastQC Report
Fri 29 Sept 2023
SRR10240644_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10240644_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38216780
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length16-69
%GC68

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCGGTTGGCCTCGGATAGCCGGTCCCC18682874.888656239484331No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC13581533.5538132725991045No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC10587472.7703720721630654No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC9728372.5455755299112064No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC8113582.1230412399998113No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG7919592.0722808148671867No Hit
TGTGCATTTATCAGATCAAAACCAACCCGG7478861.956957127209566No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC7102421.8584558929349884No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCC7101221.8581418947383843No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG5972651.5628344407875285No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC4166531.0902357550793134No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG3953451.0344801419690512No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC3663020.9584847284360429No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG3172730.8301929152586901No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCCCG3167490.8288217898001873No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCC3035030.7941616221984166No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG3018270.7897761140525184No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCC3003480.7859060862793779No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG2918720.7637273469926037No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC2799890.7326336755739232No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA2765780.7237082768354633No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC2647240.6926904883142955No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC2638130.6903067186717458No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG2527670.6614031846743761No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC2139510.5598352346796355No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCC1872770.49003866887791175No Hit
CCCTCGGTTGGCCTCGGATAGCCGGTCCCC1722610.4507470278762366No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC1680400.43970214131070173No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC1527880.39979297052237267No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1480030.3872722924328005No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA1400920.36657196132170217No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCC1379690.3610168098934552No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG1359990.35586200616587793No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCC1342930.3513979984708288No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1342250.35122006615942003No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCC1329880.34798326808276364No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG1300080.3401856462004387No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1293320.33841678969290456No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCCCG1271610.33273603898601606No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1254010.32813073210249527No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC1154090.3019851489319613No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1132650.2963750478193087No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1027350.26882170606733485No Hit
TCGGGCCGCCGGTGAAATACCACTACTCT1026390.26857050751005185No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCCCG1015880.2658204066381312No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCCC964290.25232110083581083No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTG962850.2519443029998864No Hit
TTAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC902990.23628102629263897No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATC863760.22601590191533666No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT857980.22450347726836223No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTC820190.2146151507269843No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCCG804490.21050700765475272No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC792160.20728067618464976No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG786630.2058336678286344No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC778460.20369586344009097No Hit
TCGACTGCATAATTTGTGGTAGTGGGG771430.20185635733832105No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC764450.20002993449474288No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCC722540.189063547478359No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA699820.18311851495599576No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC673200.17615298829467055No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCC659220.17249490930423755No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCC647880.16952762634633267No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCCC642710.16817481744929846No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT632170.16541686662246272No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC621020.16249930004568675No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCC614250.16072782688651427No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGAC602550.15766634446962827No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTAT592480.15503137626979563No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC575620.15061970160751376No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGG566250.14816789902236663No Hit
TTGCGTGCATTTATCAGATCAAAACCAACC558660.14618186042884826No Hit
TGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC556510.1456192803266No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC533060.1394832322346362No Hit
ACCTCGGTTGGCCTCGGATAGCCGGTCCCC517970.1355347049123448No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC509540.13332886758120388No Hit
CGTGCATTTATCAGATCAAAACCAACCCGG506320.13248630575365064No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCC503870.13184522610225144No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC501430.13120676310249058No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC495120.12955565591868284No Hit
ATGCGTGCATTTATCAGATCAAAACCAAC483890.12661715612879998No Hit
CAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC483050.12639735739117738No Hit
TGTGCATTTATCAGATCAAAACCAACCCG460480.12049157464338962No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT442860.1158810344565921No Hit
TCGTGCATTTATCAGATCAAAACCAACCCGG437110.11437645976453276No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCC433380.11340044870342295No Hit
CTCTCGCTTCTGGCGCCAAGCGCCCGGCCG431270.11284833520772812No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCC426910.11170747509340137No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCC423020.11068959760607774No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA420720.11008776772925401No Hit
ACCGCCGAGGGCGCACCACCGGCCCGTCTCGC420060.10991506872112197No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCC413230.10812789565211929No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCG409080.1070419852221982No Hit
ATGCGTGCATTTATCAGATCAAAACCAACC395410.1034650224325545No Hit
ATCGTTTTTTCACTGACCCGGTGAGGCGGGG389400.10189241479789768No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCC384910.10071753821227221No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT384120.10051082273284144No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)