FastQCFastQC Report
Fri 29 Sept 2023
SRR10240645_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10240645_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34622924
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length16-69
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGTTTTTTCACTGACCCGGTGAGGCGGGG19164575.535225736566906No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC16360514.725340355424631No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCC13082253.7784936939468197No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCC11503033.3223739277479853No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG8571002.4755274857779197No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC6646441.9196645551947027No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG5322101.5371607551112667No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC3817061.102466100205748No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA3677591.0621835405929319No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC3159910.9126641065901886No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC3102400.8960537244052524No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCC2926850.8453503233868983No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC2916490.842358086220563No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCCCG2872700.8297103964991519No Hit
TGTGCATTTATCAGATCAAAACCAACCCGG2776720.8019888788133549No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG2632420.7603112897108286No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG2595160.7495496336473488No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC2568430.7418293151670263No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG2412170.6966973673280743No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC2369640.6844135983431093No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCCCG2307720.6665294935806115No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG2020210.5834891356951828No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1900120.5488040236000864No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1822290.5263246974750024No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCC1695210.4896206917705737No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA1623120.46879922677818886No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1586840.45832062017638947No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG1562630.45132814316895936No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCC1490660.43054133729433136No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG1488640.4299579088120922No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1318450.38080261505354085No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1216980.35149544273037137No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1201950.3471543882313348No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCC1183120.34171579500333366No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC1176600.3398326496052153No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCC1168330.33744405873981065No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCCG1114620.3219312152838391No Hit
TGGGGGGCCCAAGTCCTTCTGATCGAGGCC1092710.31560303803341394No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCC1072650.30980918884840575No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1023400.29558450926906116No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA926720.2676608133963498No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC888730.25668831436651623No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC879580.2540455566375619No Hit
CCCTCGGTTGGCCTCGGATAGCCGGTCCCC867610.25058830964132317No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA867500.25055653878337947No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC826620.23874933266757017No Hit
ATCGTTTTTTCACTGACCCGGTGAGGCGGGG771260.22275992634244293No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT753610.2176621477723834No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATC726000.20968766242851125No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC724560.20927175301542988No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC703030.20305332963790118No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG699760.20210886867902894No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG690930.19955853526409267No Hit
CCCCCCGCGGGGGCGCGCCGGC677220.19559873106038067No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT675890.19521459250524306No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT664380.19189020546040536No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCCCG638130.18430852345111No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCC635200.183462263325882No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGG631350.18235028329785202No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC594870.1718139114997913No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT594570.17172726370539934No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG571660.16511026047366767No Hit
AGTGAGGCCCTCGGATCGGCCCCGCCGGGG550400.1589698201110917No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCC550070.15887450753726057No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTG545560.15757190236156832No Hit
TCCCCGCGGGGGCGCGCCGGC536350.15491181507373555No Hit
ATGTACACGGAGTCGACCCGCAACGCGA507050.14644921382145543No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC496740.1434714179541855No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC486000.1403694269149538No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC485130.14011814831121716No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC483340.13960114980467855No Hit
TCGGGCCGCCGGTGAAATACCACTACTCT472930.136594471339278No Hit
CGTTTTTTCACTGACCCGGTGAGGCGGGG453450.1309681412234276No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC438200.12656354500850361No Hit
TCGACTGCATAATTTGTGGTAGTGGGG427530.12348177178796338No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCCC421660.12178636327769428No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA418760.12094876793190545No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTT409860.1183782166982777No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTAT392870.11347106327588045No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCC391630.11311291905906042No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCC382400.1104470552516015No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCCC377110.10891916581049017No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGG373170.10778119144414261No Hit
TCCCCGCCACGCAGTTTTATCCGGTAAAGC368190.10634283805723631No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA368150.10633128501798404No Hit
TCGGGGGGGATGCGTGCATTTATCAGA366450.10584028084976302No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC363260.10491892596939531No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT358800.10363076209276836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)