FastQCFastQC Report
Fri 29 Sept 2023
SRR10240646_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10240646_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31954831
Total Bases971.3 Mbp
Sequences flagged as poor quality0
Sequence length16-69
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCGGTTGGCCTCGGATAGCCGGTCCCC17052515.336441929547366No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCC12481113.905860118615555No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG8998272.815934154056393No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG8597992.6906698395619744No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC7630432.3878799421596066No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC5836141.8263717307721015No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC5334041.6692436896317806No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC5175001.619473437365386No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC4876591.5260884966032209No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC4566071.4289138315267573No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG4455511.394314994186638No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG4393951.375050301470848No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG4289881.3424824559391348No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGC4239381.3266788987242648No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCG3372881.0555148922552586No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG2941430.9204961841294044No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCC2803330.8772789316269581No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC2770390.8669706311386844No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCC2591250.8109102501590448No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG2478790.775716823537574No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCC2446450.7655962880855167No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC2390630.7481278808828625No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTA2225530.6964612017506836No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCC2144550.6711191806960268No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTA2092210.654739810703427No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1979450.619452501563848No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG1891430.5919073707509203No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA1755280.5493003546161769No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCCCG1679630.5256263129665746No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCC1516040.47443217584220676No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCC1504520.4708270871468543No Hit
TGTGCATTTATCAGATCAAAACCAACCCGG1414620.44269362588711547No Hit
CCCTCGGTTGGCCTCGGATAGCCGGTCCCC1320380.4132019975320789No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC1305500.4085454246339153No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1229960.3849058065742861No Hit
ACCGCCTGGGAATACCGGGTGCTGTAGGCTT1214680.38012405698531154No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1191390.37283564416284976No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCC1148630.3594542559151698No Hit
CCCCCCGCGGGGGCGCGCCGGC1082690.33881887843500097No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1074270.33618390909343254No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT1006210.3148850951519662No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCC946780.296286968314744No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTTAT855030.2675745648600051No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATC816760.25559828496667686No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCC815300.25514139004521724No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCCCG810920.25377070528083845No Hit
TCGACTGCATAATTTGTGGTAGTGGGG779570.243959982138538No Hit
TAACGATGCCGACCGGCGATGCGGCGGCGTTAT755800.23652135728710316No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCC749850.23465935401129176No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC730910.22873223770139794No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG713880.22340284009012595No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCC712370.222930298082315No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCC703520.22016076379812494No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC643590.20140616609738918No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCC641480.20074585905336192No Hit
TCGGGGGGGATGCGTGCATTTATCAGA633260.19817347805719893No Hit
TTTGGCAATTTTTGACAGTCTCTACGGAGACTG607680.19016842867984501No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCC584490.1829113100300859No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCC581300.1819130259208694No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG551890.17270940972900153No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTC539090.1687037556230543No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC528230.1653052084675397No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGC526380.16472626627253953No Hit
TCGGGCCGCCGGTGAAATACCACTACTCTG522440.16349327586805262No Hit
TCCCCGCGGGGGCGCGCCGGC520850.1629956985220795No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC519330.16252002709699825No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC509640.15948762176210537No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG503420.15754112421999666No Hit
TTGGGGGGCCCAAGTCCTTCTGATCGAGGCC495990.1552159671881851No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC478270.14967063978526438No Hit
CCCCGCCCCTTGCCTCTCGGCGCCCC455800.14263883917896483No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCC450400.14094895385301834No Hit
ACCTCGGTTGGCCTCGGATAGCCGGTCCCC443700.1388522442819366No Hit
AGTGAGGCCCTCGGATCGGCCCCGCCGGGG443610.13882407952650416No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG442620.13851426721674728No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCC433220.13557261498269227No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCC432960.13549125013366523No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTA430290.1346556957225028No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC428220.13400790634755666No Hit
TCGGGCCGCCGGTGAAATACCACTACTCT425840.13326310503723207No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGA413920.1295328396510687No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTT407060.12738605940366263No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCCCG403090.12614368074736493No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCCC389120.12177188482079596No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCC382820.11980035194052506No Hit
TCCTCGGTTGGCCTCGGATAGCCGGTCCCCC374480.11719041793711882No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGG370550.11596055694990219No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC364450.11405161241503671No Hit
TCGCTGAGAAGACGGTCGAACTTGACTATCT362550.11345702313368516No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC352220.11022433509349494No Hit
CCCCCCCGCGGGGGCGCGCCGGC351940.11013671140992734No Hit
AAACGATGCCGACCGGCGATGCGGCGGCGTTA346270.10836233181768352No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCCCG346240.10835294356587272No Hit
TCGCCGAGGGCGCACCACCGGCCCGTCTCGCC343130.10737969479481833No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCG339850.10635324593016937No Hit
CTCTCGCTTCTGGCGCCAAGCGCCCGGCCG334440.10466023118695261No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGG333280.10429721878360114No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG331140.10362752348776309No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC330960.1035711939768982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)