FastQCFastQC Report
Fri 8 Sept 2023
SRR1027796.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1027796.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences269000856
Total Bases13.6 Gbp
Sequences flagged as poor quality0
Sequence length50-51
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGGTTTGGTGTTGAGCAATACGACTCTGTAGGCACCATCAATTCGTAT13132100.48818060266692975No Hit
TACTCCACGTTCTAGCATTAAGCCCTCTGTAGGCACCATCAATTCGTATG6314760.23474869537218127No Hit
ACTCCACGTTCTAGCATTAAGCCCTCTGTAGGCACCATCAATTCGTATGC5536320.20581049749521987No Hit
ATTTTAGATGGATACGAATAAGACTTTCTGTAGGCACCATCAATTCGTAT4019610.1494274055395571No Hit
AGCGGCAAAAGCTCAAATTTGAAATCTGGCGCTGTAGGCACCATCAATTC2915310.10837549156349152No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)