FastQCFastQC Report
Tue 27 Jun 2023
SRR1029594.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1029594.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9062689
Total Bases462.1 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATAGGGAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT346020.38180720975860477No Hit
ACGTTGTACCGTGTAGTCCGGCTTTGGCAACCGCACGACTTTTCAATCGT300600.33168963427962717No Hit
CATATGAGGTGTCCGCAGAATATCCTCTTGAAATCGTATAAGCTTTGCAG216530.23892467235717788No Hit
GTACCGTGTAGTCCGGCTTTGGCAACCGCACGACTTTTCAATCGTTCGGA165800.18294790872775177No Hit
GCCCTATGCTCTGAGCCTTGGCGCTGCGAAGCTCCATAGGAATTACAGCA115390.12732424118272181No Hit
GCATTAGAATTATCAGCTGAGCAAAGAGGTGACGAAATATTCGTAATATC112500.12413534217051915No Hit
GCAAAGAGGTGACGAAATATTCGTAATATCTCGAACATCAAAATCAGCAT102360.11294660999621635No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACGGACTCCTATCTCGTA100660.11107078704786184No Hit
ACTCACTATAGGGAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT94170.10390955708620257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)