FastQCFastQC Report
Tue 27 Jun 2023
SRR1029598.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1029598.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14832298
Total Bases756.4 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTCCGAGCCCACGAGACTAGGCATGATCTCGTA563650.3800152882580973No Hit
ACGTTGTACCGTGTAGTCCGGCTTTGGCAACCGCACGACTTTTCAATCGT303190.20441202030865346No Hit
CTATAGGGAGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT270590.18243295812961688No Hit
GTACCGTGTAGTCCGGCTTTGGCAACCGCACGACTTTTCAATCGTTCGGA158420.10680745492033668No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)