FastQCFastQC Report
Mon 25 Sept 2023
SRR1032171.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1032171.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78231902
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length29-43
%GC67

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGAATTCTCGGGTGCCAAGGAGATCGGAAGAGCGGTTCAGCA2512200.32112219385897073Illumina Paired End PCR Primer 2 (100% over 22bp)
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1568900.2005447854252604No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)