FastQCFastQC Report
Thu 24 Aug 2023
SRR10346268_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346268_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109367180
Total Bases10.9 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC43640843.9903049525460927No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA28046842.5644658662681072No Hit
GGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA24671452.255836714451264No Hit
GGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCC23922272.1873353596572573No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCG15406651.4087087186485012No Hit
GGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCG14059951.2855730576576996No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAA12454471.1387758192174289No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGC10327680.9443125442203045No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA10218930.9343689761407398No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC10046710.9186220217070606No Hit
GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAG9655240.8828279196738911No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG8994760.8224368590284581No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAA7426200.6790154048042566No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTAT6887120.6297245663644249No Hit
GAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGC6835710.6250238874221681No Hit
GGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTC6825770.6241150224409188No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG5978750.546667656604111No Hit
TACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGG5670870.5185166153136618No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTAAAAAAAAA4995040.45672202574849236No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC4967860.4542368194919171No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCC4806650.43949656560587924No Hit
GGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGC4792460.43819910141232493No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGAAAAAAAAAA4708170.43049203609346054No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT4692150.42902724565084327No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA4401370.4024397447204911No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAA4353240.39803897293502494No Hit
CGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCG4334750.39634833777372697No Hit
GGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC4163460.3806864179912109No Hit
AGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATA4161250.38048434640081236No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG3802880.34771674646818174No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC3749640.34284874127686205No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT3703960.338671985507901No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAAC3608640.32995639093921963No Hit
GGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGA3517040.3215809349751909No Hit
CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAAA3481430.3183249307516204No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCCCAAAGATTAAGCCA3416230.3123633616593205No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCT3195910.29221837849343835No Hit
CGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG3076380.2812891399412511No Hit
ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAG2911800.2662407497386327No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAAG2887220.2639932747648792No Hit
GACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCA2807730.2567250979681473No Hit
GCCGCCTGGATACCGCAGCTAGGAAAAAAAAAAAAAAAGATCGGAAGAGC2764570.25277875867330585No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2438210.22293799657264637No Hit
CGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG2337840.21376065470463806No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAAA2267020.20728522030100804No Hit
CCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG2112120.19312192195135688No Hit
CGGGGCCCGAAGCGTTTACTTTGAAAAAAAAAAAAAAAGATCGGAAGAGC2033210.185906777517716No Hit
GCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC2011350.18390800603983753No Hit
AAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCC1953560.17862397110357972No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT1946000.17793272168122098No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATA1944090.17775808062345577No Hit
AAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAG1898530.17359229706754806No Hit
CCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGG1863290.1703701238342252No Hit
GGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAAAA1834900.167774281096029No Hit
CGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATC1777490.16252499150110664No Hit
GGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGT1769580.16180173979067577No Hit
GGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCAC1714360.15675269308397638No Hit
GCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1670430.15273594875537616No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTAAAAAAAAAA1643010.1502287980726942No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1619670.14809470263382488No Hit
CGTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACG1602700.1465430488378689No Hit
GCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACC1594690.1458106536165603No Hit
GCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC1574840.1439956667073248No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA1561920.14281432510191813No Hit
CCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1560990.14272929045075497No Hit
GGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACT1555120.14219256636223043No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGCAAAAAAAAA1552440.14194752027070642No Hit
GACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAG1503090.1374351976525316No Hit
TACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCG1490070.13624471253624718No Hit
CTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC1487610.13601978216865424No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGAAAAAAAAAAA1370860.12534473321886877No Hit
TTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATG1364400.12475406241616543No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGAAAAAAAAAAA1333110.12189305786251416No Hit
CATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTACCAAAAAAAA1332550.1218418542015987No Hit
CGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTA1325560.12120272279124322No Hit
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTA1297430.11863065318132918No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1295430.11844778296377395No Hit
AAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGAC1273010.11639780782498002No Hit
GAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGC1264090.11558220665468379No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGGG1247130.11403146720981559No Hit
GGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAT1230490.11250998699975623No Hit
AGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGTCGCT1222670.11179496444911537No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAA1167350.1067367742315382No Hit
TACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGA1153370.10545851141082728No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATT1144910.10468497039056873No Hit
GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAA1135220.10379896418651373No Hit
GAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCC1120230.10242835190593742No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAAAAAAAAAAAAAAAGATC1114540.10190808613699284No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)