FastQCFastQC Report
Wed 30 Aug 2023
SRR10346269_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346269_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122873255
Total Bases12.2 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC33946902.7627574446530287No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA33531482.7289486227088227No Hit
GGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTC24548081.9978375277842197No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC24026631.9553994886844985No Hit
GGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCC18039521.4681404834599685No Hit
GGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA17277991.4061636114384697No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG16657831.355692091008739No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAA15194751.236619799809161No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCG14778111.2027116885607043No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC13507631.0993140858846786No Hit
TACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCG13085311.0649437096787255No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG11556770.9405439776133544No Hit
GACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGCT11160040.9082562352564031No Hit
GGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCG10346950.8420831693601671No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA9243670.7522930844470589No Hit
GACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCA7967600.6484405414343423No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC7636580.6215005861120876No Hit
CTACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGG7369730.5997830854240819No Hit
TACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGG7000120.5697024954698238No Hit
GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAG6536050.5319343090569221No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG6408960.5215911306329437No Hit
GGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGC6268090.5101264713789831No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGC6134640.49926568641808994No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTAT6117630.4978813330858697No Hit
GGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGA5910430.48101842829833064No Hit
AGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATA5765190.4691981180119303No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAA5630710.45825350683515303No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAA5496880.4473617956975259No Hit
ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAG5088130.4140958095396757No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA5022560.408759416359565No Hit
CCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG4913800.3999080190396193No Hit
ATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC4756040.3870687726145124No Hit
GGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGC4626680.37654085097688667No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGAAAAAAAAAA4512960.367285785665888No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTAAAAAAAAA4367460.35544431536382753No Hit
GGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGT4352000.35418610827881136No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCCCAAAGATTAAGCCA4315230.3511935937564281No Hit
AGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG4228980.3441741654845882No Hit
CGTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACG4088470.33273880471384926No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT4025580.3276205224643882No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA4001370.32565019946773605No Hit
GAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCGC3883660.31607040930103136No Hit
GGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCAC3501010.28492856317674664No Hit
CGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG3495460.2844768782270804No Hit
GCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACC3249230.26443752955026706No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA3237250.26346254113639295No Hit
GCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAAC3193510.2599027754249694No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGGG3150180.25637637743054825No Hit
GGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAACT3118450.2537940416732673No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCT3007460.244761156526699No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCC2816310.22920447578278932No Hit
GACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAG2584990.21037857261940363No Hit
CCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGG2525210.2055133967111069No Hit
TGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT2502750.20368549689678198No Hit
CGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTA2486330.2023491605231749No Hit
CGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAGCCG2482420.20203094644151814No Hit
CAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAATA2470770.20108281497059713No Hit
AAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAG2430130.19777534175358177No Hit
GCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2083710.1695820624268479No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2077840.1691043343809847No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA2075680.16892854348165515No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAAG2031760.16535412852862083No Hit
GCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC2022010.16456062794136933No Hit
AGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTA1966940.1600787738552218No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT1942920.15812391394693662No Hit
CGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGG1933350.15734506260129594No Hit
TCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCT1872310.15237734200172365No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAAA1709680.13914175220636907No Hit
CCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1708840.13907338907885203No Hit
AGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTC1685480.1371722430564731No Hit
GTACGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGC1643680.13377036361574374No Hit
TTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATG1637700.1332836832555628No Hit
CATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG1608760.1309284107432492No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAAA1602610.13042789498821367No Hit
GCCGCCTGGATACCGCAGCTAGGAAAAAAAAAAAAAAAGATCGGAAGAGC1602160.13039127188418667No Hit
ATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAAT1547000.12590209317723372No Hit
TGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGAAAAAAAAAAA1545190.12575478691436962No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1530260.12453971370742967No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG1496280.12177426243001375No Hit
TACTACCGATTGGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGA1480080.12045583068504208No Hit
CTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGC1467520.11943363915931096No Hit
CGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATC1453580.11829913678123039No Hit
CTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTACGTAGC1388940.11303843134944215No Hit
CCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTG1382540.11251756942550273No Hit
GGATGGTTTAGTGAGGCCCTCGGATCGGCCCCGCCGGGGTAAAAAAAAAA1375680.11195927055078014No Hit
CGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAAA1345250.1094827348717994No Hit
GCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA1308530.10649428958319693No Hit
TGGCGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTAC1306390.10632012637737968No Hit
CGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG1297700.10561289354628067No Hit
GCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCC1273230.10362141053396852No Hit
GCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC1248770.1016307413684125No Hit
GGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGG1247430.1015216859030877No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)