FastQCFastQC Report
Thu 24 Aug 2023
SRR10346273_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346273_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87778694
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT14113531.6078537235926522No Hit
GCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC10859901.2371908837012315No Hit
GAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAT9849831.1221208189768692No Hit
GGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT7014620.7991255827980307No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA5850330.6664863343717554No Hit
GATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGA5794250.6600975402983325No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG5432800.6189201220059164No Hit
CCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC4905170.55881100258794No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG4162530.4742073287169208No Hit
CATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGA4156500.47352037386202167No Hit
GGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACG4074270.4641524969601393No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG3993180.4549144921203772No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAA3770370.4295313393475642No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT3729930.42492429882814164No Hit
GGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCA3697390.4212172489146398No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG3627540.41325973703823843No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA3592080.40922003236913046No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCG3512690.4001756963939336No Hit
ACCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT3279230.3735792651460501No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT3078610.35072406067012113No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT3048930.347342830140535No Hit
GAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGT2969030.3382403935059686No Hit
GGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTA2745930.312824203103318No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG2657640.30276595366069126No Hit
GATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCG2647670.3016301427314469No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG2603020.2965434869650715No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2471140.2815193399892689No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG2404140.2738865082681681No Hit
GGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTC2353740.2681447960481162No Hit
GAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTA2342630.2668791130567516No Hit
GCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGG2205090.2512101626848082No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG2062660.23498412952008604No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1991060.226827252636044No Hit
GAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCA1952040.2223819825799641No Hit
GAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTT1928790.2197332760498806No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1917300.21842430237114258No Hit
GAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCT1714260.19529340457036193No Hit
CCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1713590.1952170762531509No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1693010.19287254376329635No Hit
CAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAT1690120.19254330669353545No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT1654640.1885013235671973No Hit
GGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCAC1617040.18421782397446015No Hit
CGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTA1582760.18031254828193274No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA1571970.17908332060625098No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAAAAAAAAAAAAAAGATCGGAA1566610.17847269406856292No Hit
GAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC1514900.17258174289993422No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA1457770.16607332982192696No Hit
GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAAAAAAAAAAAAA1427420.1626157709751298No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAAAAAAAAAAAAAA1371670.15626457144600486No Hit
CCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG1280910.14592493253545102No Hit
GAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAA1274080.1451468393913448No Hit
GAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGAT1271380.14483924766527057No Hit
GGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATG1260510.1436009061606681No Hit
GGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAG1246780.14203674527215No Hit
GCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1234770.14066853170542729No Hit
GAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAAAAAAAAAAA1229330.1400487913388185No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1219530.13893234729603063No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG1218540.13881956366313675No Hit
GAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAA1216220.13855526262443596No Hit
ACCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAA1211170.13797995217381567No Hit
GCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC1192010.13579719014730385No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1186050.13511820989271042No Hit
GCAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAATTT1183400.13481631430971164No Hit
CAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTA1183190.13479239050879477No Hit
CGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAGC1150490.13106711293745155No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1149210.13092129167472005No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1129380.12866220133099726No Hit
GAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCC1111290.12660133676630003No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAAA1105130.1258995719394048No Hit
GATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGA1099070.12520919939866046No Hit
CCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1097810.12506565659315916No Hit
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG1065730.12141101119595148No Hit
ACCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG1062880.12108633104065093No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAA1059140.1206602595386074No Hit
GAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACG1049980.11961672612718525No Hit
GGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGG1016850.1158424617253932No Hit
GAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC1011870.11527512587507852No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC968250.11030581065605738No Hit
GAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATAT957990.10913696209697538No Hit
GAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA943230.10745546066110302No Hit
GAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCA938900.1069621746707692No Hit
TAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAT934700.10648369865243154No Hit
GAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAG920120.1048227033316308No Hit
GATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAG878480.1000789553783974No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)