FastQCFastQC Report
Tue 18 Jul 2023
SRR10346275_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346275_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84595585
Total Bases8.4 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT18373502.1719218562056164No Hit
GCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC15454741.8268967582646303No Hit
GCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC7381430.8725549920838068No Hit
CCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC6864050.8113957720133976No Hit
GAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAT6792630.8029532510473212No Hit
CCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAA6130120.7246382893386221No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA6101610.721268137101954No Hit
GGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTA5592040.661032133059899No Hit
GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAA5538760.6547339320367606No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG5459790.6453989295067822No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT5418800.6405535229764059No Hit
CGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCG5070270.5993539733781615No Hit
GCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAA5023070.5937744859852911No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG4435890.5243642443042388No Hit
ACCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT4402230.5203853132524587No Hit
CCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC3783840.4472857537423496No Hit
GATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGA3612340.4270128281517292No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA3371690.39856571711159633No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG3329510.3935796413016117No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAA3321310.3926103235765791No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG3205070.37886965377684895No Hit
CGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTA3093070.36563019216664794No Hit
CATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGA2693890.31844333247414747No Hit
GGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCG2667360.31530723500523106No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA2630080.3109003856406927No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA2616840.30933529214320105No Hit
GGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCC2505770.2962057653481562No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG2411570.2850704324581478No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT2410300.2849203064202464No Hit
CCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAA2382960.2816884592736134No Hit
GGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACG2252540.26627157906644894No Hit
GCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA2187530.2585867808585992No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAA2144970.2535557854467228No Hit
GGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCA2075160.245303581741293No Hit
CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC2009520.23754431156188588No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2004030.23689534152402872No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1981820.23426990900293435No Hit
GAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTA1885580.22289342877645446No Hit
GCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAA1815850.2146506818293177No Hit
GAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTT1761710.2082508206545294No Hit
CCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAA1754890.2074446320100511No Hit
CCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAAA1752750.20719166372571335No Hit
CCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1739580.2056348448917281No Hit
GCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAA1560980.18452263200260394No Hit
GAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGT1548050.18299418344349766No Hit
GGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGA1526590.18045740803140023No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1509560.1784443006097777No Hit
GCGGGGCCCGAAGCGTTTACTTTGAAAAAAAAAAAAAAAGATCGGAAGAG1489700.17609666036354024No Hit
GCATAACCCAGAGGTCGATGGATCGAAACCATCCTCTGCTACCAAAAAAA1433620.16946747280014673No Hit
ACCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG1419010.16774043231688746No Hit
GGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCC1418250.16765059311310396No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1400540.1655571032459909No Hit
GCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTAT1376930.16276617745476907No Hit
GAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCA1341890.15862411732243473No Hit
CAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAT1309460.15479058392940956No Hit
ACCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAA1307130.1545151558441259No Hit
GGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGAT1301490.15384845438446937No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1280500.1513672374273433No Hit
TCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC1274900.15070526434683323No Hit
GAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCT1262850.14928084012895No Hit
CGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAAA1256670.1485503055508157No Hit
GCATAACCCAGAGGTCGATGGATCGTAACCATCCTCTGCTACCAAAAAAA1250110.1477748513707896No Hit
GCGACTCTTAGCGGTGGATCACTCGGCTCGTGCGTCGATGAAGAACGCAG1230390.14544376045156493No Hit
GATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCG1218590.14404888860334733No Hit
GAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC1215240.1436528868498279No Hit
GAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCC1158510.13694686312530377No Hit
GAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAA1153490.13635345154241796No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA1146790.13556144803537915No Hit
GATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAAC1085000.1282572843488227No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAA1084770.12823009616873032No Hit
CCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT1074200.1269806219792676No Hit
GGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT1031270.12190588906028606No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1025920.12127346834944165No Hit
GGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGC1017380.12026395940166382No Hit
GGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGG1005470.11885608451079333No Hit
GGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAAAA992900.11737019136400559No Hit
GGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCAC990110.11704038691853719No Hit
GCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGAT989030.11691272068158166No Hit
GGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAAAAA935970.11064052574374893No Hit
GAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGAT931690.11013458917507339No Hit
CAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTA918190.1085387612131295No Hit
GGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGT907070.1072242718104024No Hit
GAGAGGTCGATGGATCGAAACCATCCTCTGCTACCAAAAAAAAAAAAAAA901470.10656229872989234No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAAAAAAAAAAAAAA895320.10583531043611791No Hit
GCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTT889890.1051934329669805No Hit
CCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG883140.10439551898600855No Hit
CCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAG875310.10346993876808111No Hit
GGGCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCA855160.10108801777303153No Hit
ACCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAAA852780.10080667921381475No Hit
CCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCGAAA852160.10073338933704401No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)