FastQCFastQC Report
Tue 25 Jul 2023
SRR10346283_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346283_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52347295
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG7508881.4344351508516342No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA5715131.0917717906913815No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG4749340.9072751514667567No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG4051150.7738986322024853No Hit
GGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG2817440.5382207428292141No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA2629450.5023086675252275No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG2425180.46328659389181426No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA2384450.4555058671130954No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG2357930.4504397027582801No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA2351760.44926103631524794No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG2329520.4450124882288569No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT2198410.4199663038940217No Hit
GAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC2151510.41100691067227063No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG1946640.3718702179358074No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1831100.3497983993251227No Hit
GATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCG1826030.34882986790434917No Hit
GAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTT1612630.3080636735861901No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG1560520.2981090044862872No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG1518750.2901296045956147No Hit
GCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA1465530.27996289015506914No Hit
GTACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC1430450.2732614932634055No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG1403230.2680616066216984No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA1392300.26597362862780205No Hit
GCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGG1377380.2631234335986224No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG1309240.2501065241288972No Hit
GAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCA1267150.24206599404993134No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1198790.2290070575757544No Hit
GCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1173890.22425036479917443No Hit
GGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACG1157860.2211881244293521No Hit
GCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG1152540.22017183504897436No Hit
CCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1100030.21014075321370476No Hit
CTACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC1090880.20839281189219042No Hit
GAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCC1090230.20826864119721944No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAA1088580.20795343866383165No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1044580.19954803777348953No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT1035130.19774278690045016No Hit
GCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG1002970.19159920297696376No Hit
CGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGC993980.18988182674959614No Hit
GATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAAC990060.18913298194300202No Hit
GAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGAT978570.18693802611959223No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA963470.18405344535949755No Hit
CCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA950430.18156239018654163No Hit
GAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC940140.1795966725692321No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC921700.17607404546882507No Hit
GGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG916500.17508067990905737No Hit
CGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG910620.17395741269916623No Hit
GCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAG866320.16549470225729906No Hit
CGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG838700.16021840288022524No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGC810500.15483130503686962No Hit
CAGTGACGAAAAATAACAATACAGGAAAAAAAAAAAAAA794900.15185120835756652No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN762760.14571144507084846No Hit
GCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCG761300.14543253858675984No Hit
GGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGAT757100.14463020486540898No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA739390.1412470310070463No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC736510.14069685931240572No Hit
GGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGT724280.13836053992856745No Hit
GCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTT663440.12673816287928535No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCAAAA661040.12627968646708487No Hit
GCGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGAC653060.1247552523965183No Hit
CCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA641130.12247624256420508No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT638140.12190505736733866No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG636110.12151726273535242No Hit
CCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG635360.12137398885653976No Hit
GCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC635230.12134915471754557No Hit
CCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG633010.12092506403626013No Hit
CATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCG630680.12047995985274883No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAA623800.1191656608044408No Hit
GCGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGT622230.11886574081812631No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC620080.11845502236553006No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAGG616730.11781506570683357No Hit
GGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT613390.11717701936652122No Hit
GAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA612430.11699362880164103No Hit
CCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA604600.11549784950683699No Hit
GCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA598500.1143325552924941No Hit
CCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG589870.11268395052695655No Hit
GGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATG587150.11216434392646267No Hit
GAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATAT583750.11151483567584533No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC577390.11029987318351407No Hit
GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCT572450.10935617590173476No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAA571900.10925110839060548No Hit
GAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAT571750.10922245361484294No Hit
GAGTGACGAAAAATAACAATACAGGAAAAAAAAAAAAAA568120.10852900804138972No Hit
GAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCC558090.10661295870206856No Hit
GATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAG555790.10617358547370978No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG552020.10545339544287817No Hit
CGTCTACGGCCATACCACCCTGAACGCGCCCGATCTCGTCTGATCTCGGA548470.10477523241649832No Hit
GGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCA548010.10468735777082656No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT540170.10318966815763833No Hit
CAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC534240.10205684935582632No Hit
CCGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGAC525580.10040251363513625No Hit
GCAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTAACGGAAAAAAAA524960.10028407389531781No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)