FastQCFastQC Report
Thu 24 Aug 2023
SRR10346284_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346284_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79602387
Total Bases6.8 Gbp
Sequences flagged as poor quality0
Sequence length35-100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG11406621.432949491828681No Hit
GGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG10339391.2988793916443737No Hit
GCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA9719701.22103122359886No Hit
GCTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCG6968480.875410934599235No Hit
GATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG5254520.6600957833086085No Hit
GGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA4890270.6143371052428366No Hit
GGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG4715890.5924307269830991No Hit
CGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTAA4662510.5857248979229731No Hit
GCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG4558720.572686344192166No Hit
CCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTAAAAGTCGTA4250050.5339098688083311No Hit
GAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTT4178890.5249704383864771No Hit
GCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG3947100.49585196484120503No Hit
CCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG3862410.48521283664521264No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT3811930.4788713182683831No Hit
GAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC3719980.46732015712041397No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG3276450.4116019787195577No Hit
GATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCG3161170.3971200009366553No Hit
CGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCG3143570.3949090119621664No Hit
GTACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC3013310.3785451810634774No Hit
GATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG2784680.34982368053862506No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTCCTCCCGG2721950.3419432635858018No Hit
GCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA2586400.3249148797510306No Hit
GATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAAC2513110.3157078694135139No Hit
GAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCC2511910.31555712016525334No Hit
CCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT2344780.2945615186137571No Hit
CCGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGG2302100.28919987035062156No Hit
GAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCA2181220.2740143960758363No Hit
CTACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGC2168920.27246921628116505No Hit
GCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG2036570.2558428304417555No Hit
CGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAA1908010.23969256097810232No Hit
GCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAG1885000.2368019441427052No Hit
GGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1879740.23614115993782953No Hit
GCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAA1875700.23563363746868546No Hit
GGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACG1768930.22222072310469784No Hit
GCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1754070.2203539449137373No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCAC1732040.21758643996441968No Hit
CCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCA1685140.2116946568449009No Hit
GAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGAT1628870.2046257733452139No Hit
GCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG1617110.2031484307122599No Hit
CCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGT1551730.19493510916952778No Hit
CGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCGC1537620.19316254925873014No Hit
GCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAAT1531760.19242639042972418No Hit
CGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGG1479980.18592156036727892No Hit
GAGTAAGTGCGGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA1468120.18443165529696992No Hit
CGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTAAAAAAA1439700.18086141060066455No Hit
CCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGAGATTGAGCAA1372000.17235664051129523No Hit
GGCCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1358420.17065066151847932No Hit
GCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGG1352340.16988686532729225No Hit
GGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG1351610.1697951595346004No Hit
CTCGCCGGCCGAGGTGGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGC1328070.16683796178122146No Hit
CGGCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGA1299080.16319611119199226No Hit
GGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAACGAT1285570.1614989259053249No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCGC1278880.16065849884627204No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAGG1272000.15979420315624457No Hit
GCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTT1250520.15709579161237966No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1236530.15533830662640807No Hit
GCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGTCCTGGGAAACGGGGCG1219980.15325922324414717No Hit
GGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCGGT1214700.15259592655180051No Hit
GAGGCGCGCAAATTACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAAT1207990.15175298700527662No Hit
GCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTC1206740.15159595653833846No Hit
CGCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTG1180450.14829329175769568No Hit
GTGGCGCTAAACCATTCGTAGACGACCTGCTTCTGGGTCGGGGTTTCGTA1174400.1475332642977151No Hit
GCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATT1169990.14697926081035734No Hit
CCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG1159030.1456024176762438No Hit
CCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTG1146450.14402206305697843No Hit
GAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGA1143060.14359619643064223No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC1121840.14093044722390044No Hit
CAAGTGGCGTTCAGCCACCCGAGATTGAGCAATAACAGGTCTGTGATGCC1117210.14034880637436162No Hit
GATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGGAG1115460.14012896372064823No Hit
GCCCTGGCGGAGCGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAG1113630.1398990711170508No Hit
CAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTT1102610.13851469052052423No Hit
CATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCG1092690.13726849673490318No Hit
CTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1079360.13559392383547494No Hit
GAAGAGAAATAAGGCCTACTTCACAAAGCGCCTTCCCCCGTAAATGATAT1049550.13184906125993434No Hit
GGTTGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATG1021380.12831022265701655No Hit
GTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCC1015920.1276243135774308No Hit
CCCCCCGCCACGCAGTTTTATCCGGTAAAGCGAATGATTAGAGGTCAAAA1006970.12649997543415376No Hit
GAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCC990490.1244296857580414No Hit
GCGGCCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTGGGGAGTTTGAC989270.12427642402230979No Hit
CCGGGCCGCCGGTGAAATACCACTACTCTGATCGTTTTTTCACTGACCCG980180.12313449846673569No Hit
GCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA976300.12264707589735972No Hit
GAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCT955840.12007680121451635No Hit
CCCTGGCGGACGCTGAGAAGACGGTCGAACTTGACTATCTAGAGGAAGTA939040.11796631173886783No Hit
CAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGC913860.11480309001286608No Hit
GGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTA910910.11443249811089208No Hit
GGGGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCA909520.11425788023165687No Hit
CCCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGA896110.11257325738234457No Hit
CAGTGACGAAAAATAACAATACAGGAAAAAAAAAAAAAA895170.1124551704712071No Hit
CCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAG892120.11207201613187806No Hit
GAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGC867350.108960300399032No Hit
CCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG867330.108957787911561No Hit
GATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAG866840.10889623196852125No Hit
CCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTT863050.10842011559276483No Hit
GCGGGGAGGTGGAGCACGAGCGCACGTGTTAGGACCCGAAAGATGGTGAA859200.10793646175459538No Hit
GACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGG843710.10599054020829803No Hit
CCCCTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCAAA836180.10504458867546271No Hit
GACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCG821920.10325318510863249No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)