FastQCFastQC Report
Mon 17 Jul 2023
SRR10346288_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR10346288_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56883385
Total Bases2.5 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN25158974.4229031025491885No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAA11750612.0657367700603615No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA8307381.460422933691446No Hit
GCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAA6395651.1243441296610601No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA4776240.8396546724496089No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA4363980.767180082549588No Hit
GCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAA3722210.6543580344242875No Hit
GGGGAGAGAAAAAAAAAAAAAANNNNNNNNNNNNN3559580.6257679637032852No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAAAAAAAAAA3120640.5486030762761394No Hit
GGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3007420.5286991974897415No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA2273580.3996914037376643No Hit
GGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA2138170.3758865616031817No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAA2007880.35298180655036615No Hit
GCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA1868350.3284526755923544No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1795190.31559127502696965No Hit
GGAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGA1785250.31384384034107676No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGAAAAAAAAAAAAAA1782190.3133058976711741No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCCAAAAAAAAAAAAAA1453130.2554577228482447No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA1326070.2331207961692153No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1261040.22168863544249345No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCAAAAAAAAAAAAAA1259300.22138274647333311No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA1202850.2114589348014363No Hit
CGAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGA1202340.21136927768978583No Hit
CCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA1190430.20927552043536085No Hit
GCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCCCAAAAAAAAAAAAA1158210.20361130055815066No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGAAAAAAAAAAAAAA1154690.2029924906895045No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAA1121310.1971243448328541No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAA1039160.18268251792680762No Hit
GGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1009480.17746482562526825No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA924440.16251494175320264No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGAAAAAAAAAAAAAA920970.16190492179746335No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAA906510.15936287898478615No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTATAAAAAAAAAAAAAA885850.1557308869716526No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTAAAAAAAAAAAAAA878280.15440009415754707No Hit
GGGGAGAGCGACGAAAAAAAAAAAAAANNNNNNNN854830.1502776250042082No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCCAAAAAAAAAAAAAA790060.13889117182460223No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA745050.13097849222580546No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCAAAAAAAAAAAAAA713530.12543733112929195No Hit
CCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTCAAAAAAAAAAAAAA658610.11578249079234647No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGAGAAAAAAAAA653630.11490701546681865No Hit
GGCGCGCGGGTCGGGGGGCGGGGCGGACTGCAAAAAAAAAAAAAA647850.1138909015347803No Hit
GGGGAGAGATAAAAAAAAAAAAAANNNNNNNNNNN635920.11179362831519257No Hit
GCGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAAAA628040.11040833804106419No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAA626150.11007607933318313No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAA614770.10807549515557135No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGAAAAAAAAAA599810.1054455532138251No Hit
ACGCGCGCGGGTCGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAA586100.10303535909475148No Hit
GAGGGAGAGAAAAAAAAAAAAAANNNNNNNNNNNN576980.10143207898053183No Hit
CGCGCGCGGGTCGGGGGGCGGGGCGGACTAAAAAAAAAAAAAA574840.10105587070811627No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)